RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 VCANP13611 3396 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 MEIS3P2A8K0S8 358 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 TNFRSF10AO00220 468 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 LINC01565O15544 149 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 RB1P06400 928 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 SRGAP2CP0DJJ0 459 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 ZSCAN20P17040 1043 aaPredicted RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 ATF7P17544 494 aaPredicted RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 DNM2P50570 870 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 POLGP54098 1239 aaPredicted RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 EMC2Q15006 297 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 TIGD5Q53EQ6 642 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 CLLU1OSQ5K130 101 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 HELQQ8TDG4 1101 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 PIGOQ8TEQ8 1089 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 POF1BQ8WVV4 589 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 PRPF31Q8WWY3 499 aaKnown RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 LPPQ93052 612 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 CASD1Q96PB1 797 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 LLPHQ9BRT6 129 aaKnown RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 NSUN3Q9H649 340 aaKnown RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 IGFLR1Q9H665 355 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 DHX33Q9H6R0 707 aaKnown RBP11.87□□□□□ -0.51
NELFE-213ENST00000494956 ZSWIM4Q9H7M6 989 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 IFT122Q9HBG6 1241 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 RWDD3Q9Y3V2 267 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 COL4A3BPQ9Y5P4 624 aa11.87□□□□□ -0.51
NELFE-213ENST00000494956 MED24O75448 989 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 IL9P15248 144 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 TECP42680 631 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 DLX2Q07687 328 aaPredicted RBP11.86□□□□□ -0.51
NELFE-213ENST00000494956 HYAL1Q12794 435 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 SAFBQ15424 915 aaKnown RBP eCLIP11.86□□□□□ -0.51
NELFE-213ENST00000494956 CLUL1Q15846 466 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 AAK1Q2M2I8 961 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 ZNF598Q86UK7 904 aaKnown RBP11.86□□□□□ -0.51
NELFE-213ENST00000494956 FAM184AQ8NB25 1140 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 COLGALT1Q8NBJ5 622 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 FBXO18Q8NFZ0 1043 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 SLC7A3Q8WY07 619 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 HSD17B14Q9BPX1 270 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 PLVAPQ9BX97 442 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 SH2B1Q9NRF2 756 aaPredicted RBP11.86□□□□□ -0.51
NELFE-213ENST00000494956 CLDND1Q9NY35 253 aa11.86□□□□□ -0.51
NELFE-213ENST00000494956 PIN4Q9Y237 131 aaKnown RBP11.86□□□□□ -0.51
NELFE-213ENST00000494956 A0A0U1RQF3 1178 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 DKC1O60832 514 aaKnown RBP eCLIP11.85□□□□□ -0.51
NELFE-213ENST00000494956 SPATA31C1P0DKV0 1188 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 LTBRP36941 435 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 HMGN5P82970 282 aaKnown RBP11.85□□□□□ -0.51
NELFE-213ENST00000494956 RBM10P98175 930 aaKnown RBP11.85□□□□□ -0.51
NELFE-213ENST00000494956 LAMTOR4Q0VGL1 99 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 RABEP1Q15276 862 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 MAEAQ7L5Y9 396 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 CATSPER4Q7RTX7 472 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 RBM23Q86U06 439 aaKnown RBP11.85□□□□□ -0.51
NELFE-213ENST00000494956 ZNF410Q86VK4 478 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 RNF149Q8NC42 400 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 ASAP3Q8TDY4 903 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 KHSRPQ92945 711 aaKnown RBP eCLIP11.85□□□□□ -0.51
NELFE-213ENST00000494956 P2RX5Q93086 422 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 MTRQ99707 1265 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 TMEM117Q9H0C3 514 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 LMAN2LQ9H0V9 348 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 FOXP1Q9H334 677 aaPredicted RBP11.85□□□□□ -0.51
NELFE-213ENST00000494956 ELAC1Q9H777 363 aaKnown RBP11.85□□□□□ -0.51
NELFE-213ENST00000494956 CD320Q9NPF0 282 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 XIRP2A4UGR9 3374 aa11.85□□□□□ -0.51
NELFE-213ENST00000494956 NT5C1B-RDH14C9J2C7 533 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 PER2O15055 1255 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 USO1O60763 962 aaKnown RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 FGF18O76093 207 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 OR52Z1P0C646 297 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 SFPQP23246 707 aaKnown RBP eCLIP11.84□□□□□ -0.51
NELFE-213ENST00000494956 RFC5P40937 340 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 PHKA2P46019 1235 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 RARRES1P49788 294 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 TOB1P50616 345 aaPredicted RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 ERVFC1P60507 584 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 GNL2Q13823 731 aaKnown RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 LEXMQ3ZCV2 418 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 TTC38Q5R3I4 469 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 TWF2Q6IBS0 349 aaKnown RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 OTUD6AQ7L8S5 288 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 FERMT3Q86UX7 667 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 CATSPER3Q86XQ3 398 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 NOSTRINQ8IVI9 506 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 THNSL1Q8IYQ7 743 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 NEK9Q8TD19 979 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 PSPC1Q8WXF1 523 aaKnown RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 PABPC5Q96DU9 382 aaKnown RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 CPB2Q96IY4 423 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 TMX3Q96JJ7 454 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 POLD4Q9HCU8 107 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 GPRC5CQ9NQ84 441 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 PCDHB6Q9Y5E3 794 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 TTC28Q96AY4 2481 aa11.84□□□□□ -0.51
NELFE-213ENST00000494956 SPTBN5Q9NRC6 3674 aaKnown RBP11.84□□□□□ -0.51
NELFE-213ENST00000494956 B4GALT3O60512 393 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms