RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 JPH2Q9BR39 696 aaPredicted RBP18.66■□□□□ 0.58
PTPRU-208ENST00000493601 MRPL9Q9BYD2 267 aaKnown RBP18.66■□□□□ 0.58
PTPRU-208ENST00000493601 ENTPD7Q9NQZ7 604 aa18.66■□□□□ 0.58
PTPRU-208ENST00000493601 CHST12Q9NRB3 414 aa18.66■□□□□ 0.58
PTPRU-208ENST00000493601 PER2O15055 1255 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 DKC1O60832 514 aaKnown RBP eCLIP18.65■□□□□ 0.58
PTPRU-208ENST00000493601 MAFO75444 373 aaPredicted RBP18.65■□□□□ 0.58
PTPRU-208ENST00000493601 STBD1O95210 358 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 ERVFC1P60507 584 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 KRT17Q04695 432 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 PLPP4Q5VZY2 271 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 PPP4R3AQ6IN85 833 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 ZNF598Q86UK7 904 aaKnown RBP18.65■□□□□ 0.58
PTPRU-208ENST00000493601 TCF25Q9BQ70 676 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 INO80BQ9C086 356 aaPredicted RBP18.65■□□□□ 0.58
PTPRU-208ENST00000493601 KCNMB3Q9NPA1 279 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 NGRNQ9NPE2 291 aaKnown RBP18.65■□□□□ 0.58
PTPRU-208ENST00000493601 SPG21Q9NZD8 308 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 VAV3Q9UKW4 847 aa18.65■□□□□ 0.58
PTPRU-208ENST00000493601 USP15Q9Y4E8 981 aaPredicted RBP18.65■□□□□ 0.58
PTPRU-208ENST00000493601 PFKFB2O60825 505 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 CSDE1O75534 798 aaKnown RBP18.64■□□□□ 0.57
PTPRU-208ENST00000493601 ATF7P17544 494 aaPredicted RBP18.64■□□□□ 0.57
PTPRU-208ENST00000493601 QARSP47897 775 aaKnown RBP18.64■□□□□ 0.57
PTPRU-208ENST00000493601 HERC4Q5GLZ8 1057 aaPredicted RBP18.64■□□□□ 0.57
PTPRU-208ENST00000493601 ANO5Q75V66 913 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 RHPN2Q8IUC4 686 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 RNF135Q8IUD6 432 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 VN1R2Q8NFZ6 395 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 HELQQ8TDG4 1101 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 SH2D3AQ9BRG2 576 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 TRAIPQ9BWF2 469 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 CYP26B1Q9NR63 512 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 SUCLA2Q9P2R7 463 aaPredicted RBP18.64■□□□□ 0.57
PTPRU-208ENST00000493601 MUTYHQ9UIF7 546 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 ARID2Q68CP9 1835 aa18.64■□□□□ 0.57
PTPRU-208ENST00000493601 A0A087WZ62 844 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 TBX3O15119 743 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 SKIP12755 728 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 PBX3P40426 434 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 PHKA2P46019 1235 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 ANAPC15P60006 121 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 ANKRD1Q15327 319 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 PLA2G4FQ68DD2 849 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 TWF2Q6IBS0 349 aaKnown RBP18.63■□□□□ 0.57
PTPRU-208ENST00000493601 PIK3AP1Q6ZUJ8 805 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 EXOC8Q8IYI6 725 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 SLC7A3Q8WY07 619 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 WASF1Q92558 559 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 FDXACB1Q9BRP7 624 aaPredicted RBP18.63■□□□□ 0.57
PTPRU-208ENST00000493601 TPCN1Q9ULQ1 816 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 PIN4Q9Y237 131 aaKnown RBP18.63■□□□□ 0.57
PTPRU-208ENST00000493601 PPME1Q9Y570 386 aa18.63■□□□□ 0.57
PTPRU-208ENST00000493601 CARNS1A5YM72 827 aa18.62■□□□□ 0.57
PTPRU-208ENST00000493601 EML1O00423 815 aa18.62■□□□□ 0.57
PTPRU-208ENST00000493601 CCNT1O60563 726 aaKnown RBP18.62■□□□□ 0.57
PTPRU-208ENST00000493601 P4HBP07237 508 aaKnown RBP18.62■□□□□ 0.57
PTPRU-208ENST00000493601 ALDH7A1P49419 539 aaKnown RBP18.62■□□□□ 0.57
PTPRU-208ENST00000493601 RAB27AP51159 221 aa18.62■□□□□ 0.57
PTPRU-208ENST00000493601 RBM10P98175 930 aaKnown RBP18.62■□□□□ 0.57
PTPRU-208ENST00000493601 TMEM184AQ6ZMB5 413 aa18.62■□□□□ 0.57
PTPRU-208ENST00000493601 NLRP4Q96MN2 994 aa18.62■□□□□ 0.57
PTPRU-208ENST00000493601 LOC730098B7Z3J9 87 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 MARCH6O60337 910 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 POLGP54098 1239 aaPredicted RBP18.61■□□□□ 0.57
PTPRU-208ENST00000493601 KCNC3Q14003 757 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 SMC1AQ14683 1233 aaKnown RBP18.61■□□□□ 0.57
PTPRU-208ENST00000493601 CATSPER4Q7RTX7 472 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 TMC7Q7Z402 723 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 SLC39A11Q8N1S5 342 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 OXER1Q8TDS5 423 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 SUSD6Q92537 303 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 PHF7Q9BWX1 381 aaPredicted RBP18.61■□□□□ 0.57
PTPRU-208ENST00000493601 BRMS1Q9HCU9 246 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 ORC3Q9UBD5 711 aaPredicted RBP18.61■□□□□ 0.57
PTPRU-208ENST00000493601 COL4A3BPQ9Y5P4 624 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 WDFY4Q6ZS81 3184 aa18.61■□□□□ 0.57
PTPRU-208ENST00000493601 HIDE1A8MVS5 230 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 RFC5P40937 340 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 TECP42680 631 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 BCAR1P56945 870 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 BMS1Q14692 1282 aaKnown RBP18.6■□□□□ 0.57
PTPRU-208ENST00000493601 CBX2Q14781 532 aaPredicted RBP18.6■□□□□ 0.57
PTPRU-208ENST00000493601 ANKRD54Q6NXT1 300 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 GLB1LQ6UWU2 654 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 KSR1Q8IVT5 923 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 SLFN12Q8IYM2 578 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 PSPC1Q8WXF1 523 aaKnown RBP18.6■□□□□ 0.57
PTPRU-208ENST00000493601 CEP170P1Q96L14 293 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 LXNQ9BS40 222 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 FAM105AQ9NUU6 356 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 MUC6Q6W4X9 2439 aa18.6■□□□□ 0.57
PTPRU-208ENST00000493601 GAS2O43903 313 aaKnown RBP18.59■□□□□ 0.57
PTPRU-208ENST00000493601 ZC3H11AO75152 810 aaKnown RBP eCLIP18.59■□□□□ 0.57
PTPRU-208ENST00000493601 CTDNEP1O95476 244 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 HOXB8P17481 243 aaPredicted RBP18.59■□□□□ 0.57
PTPRU-208ENST00000493601 KRT2P35908 639 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 AK2P54819 239 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 NPEPPSP55786 919 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 EPHA7Q15375 998 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms