RNA–Protein interactions for RNA: ENST00000493075.1

LRTM1-202, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

TSL 1 (best) BASIC

Gene LRTM1, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-202ENST00000493075 ZNF579Q8NAF0 562 aaKnown RBP12.85□□□□□ -0.35
LRTM1-202ENST00000493075 FBXO18Q8NFZ0 1043 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 POF1BQ8WVV4 589 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 TCP11Q8WWU5 503 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 PRPF31Q8WWY3 499 aaKnown RBP12.85□□□□□ -0.35
LRTM1-202ENST00000493075 PPP2R3CQ969Q6 453 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 C8orf76Q96K31 380 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 CASD1Q96PB1 797 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 EIF2AK1Q9BQI3 630 aaKnown RBP12.85□□□□□ -0.35
LRTM1-202ENST00000493075 FOXP1Q9H334 677 aaPredicted RBP12.85□□□□□ -0.35
LRTM1-202ENST00000493075 CWH43Q9H720 699 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 TTC12Q9H892 705 aaPredicted RBP12.85□□□□□ -0.35
LRTM1-202ENST00000493075 IFT122Q9HBG6 1241 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 ANKEF1Q9NU02 776 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 RNF19AQ9NV58 838 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 COL4A3BPQ9Y5P4 624 aa12.85□□□□□ -0.35
LRTM1-202ENST00000493075 GRXCR2A6NFK2 248 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 ZNF623O75123 536 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 CSDE1O75534 798 aaKnown RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 LAG3P18627 525 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 IBSPP21815 317 aaPredicted RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 FGFR4P22455 802 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 DNAJB1P25685 340 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 TXKP42681 527 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 PLCB3Q01970 1234 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 HYAL1Q12794 435 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 CTTNQ14247 550 aaKnown RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 XKR9Q5GH70 373 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 SPOUT1Q5T280 376 aaKnown RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 PDE12Q6L8Q7 609 aaKnown RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 SRGAP1Q7Z6B7 1085 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 TPH2Q8IWU9 490 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 ABI1Q8IZP0 508 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 COLGALT1Q8NBJ5 622 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 PSPC1Q8WXF1 523 aaKnown RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 NECAB3Q96P71 396 aaPredicted RBP12.84□□□□□ -0.35
LRTM1-202ENST00000493075 FAM50BQ9Y247 325 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 LZTS1Q9Y250 596 aa12.84□□□□□ -0.35
LRTM1-202ENST00000493075 REV3LO60673 3130 aa12.83□□□□□ -0.35
LRTM1-202ENST00000493075 COL4A4P53420 1690 aaPredicted RBP12.83□□□□□ -0.36
LRTM1-202ENST00000493075 WNT7AO00755 349 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 ZBTB39O15060 712 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 FGF18O76093 207 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 LTBRP36941 435 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 PHKA2P46019 1235 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 TRAPPC10P48553 1259 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 POU5F1BQ06416 359 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 LAMTOR4Q0VGL1 99 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 ADAM15Q13444 863 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 MXD4Q14582 209 aaPredicted RBP12.83□□□□□ -0.36
LRTM1-202ENST00000493075 RABEP1Q15276 862 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 PCBP1Q15365 356 aaKnown RBP eCLIP12.83□□□□□ -0.36
LRTM1-202ENST00000493075 PTCRAQ6ISU1 281 aaPredicted RBP12.83□□□□□ -0.36
LRTM1-202ENST00000493075 LRRC55Q6ZSA7 311 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 CATSPER4Q7RTX7 472 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 KSR1Q8IVT5 923 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 LRRC43Q8N309 656 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 FAM184AQ8NB25 1140 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 TMEM143Q96AN5 459 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 NLRP4Q96MN2 994 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 CLDND1Q9NY35 253 aa12.83□□□□□ -0.36
LRTM1-202ENST00000493075 CARNS1A5YM72 827 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 DGAT1O75907 488 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 SRGAP2CP0DJJ0 459 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 ATF7P17544 494 aaPredicted RBP12.82□□□□□ -0.36
LRTM1-202ENST00000493075 MCM7P33993 719 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 RAB27AP51159 221 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 FOSBP53539 338 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 GUCY1B3Q02153 619 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 CYP4A11Q02928 519 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 EMC2Q15006 297 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 CLLU1OSQ5K130 101 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 KCNT2Q6UVM3 1135 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 FERMT3Q86UX7 667 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 FAM178BQ8IXR5 827 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 THNSL1Q8IYQ7 743 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 MTRQ99707 1265 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 MRPL9Q9BYD2 267 aaKnown RBP12.82□□□□□ -0.36
LRTM1-202ENST00000493075 TMEM60Q9H2L4 133 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 TUFT1Q9NNX1 390 aa12.82□□□□□ -0.36
LRTM1-202ENST00000493075 PUF60Q9UHX1 559 aaKnown RBP12.82□□□□□ -0.36
LRTM1-202ENST00000493075 FSD2A1L4K1 749 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 H3BQ06 376 aaPredicted RBP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 U2AF2P26368 475 aaKnown RBP eCLIP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 IRS1P35568 1242 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 PPM1AP35813 382 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 KRT17Q04695 432 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 TWF2Q6IBS0 349 aaKnown RBP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 MRPL10Q7Z7H8 261 aaKnown RBP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 IFNLR1Q8IU57 520 aaPredicted RBP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 NOSTRINQ8IVI9 506 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 EFHBQ8N7U6 833 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 RNF169Q8NCN4 708 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 MICAL1Q8TDZ2 1067 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 MRPS27Q92552 414 aaKnown RBP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 PGBD4Q96DM1 585 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 ZNF558Q96NG5 402 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 POLR3CQ9BUI4 534 aaPredicted RBP12.81□□□□□ -0.36
LRTM1-202ENST00000493075 IGFLR1Q9H665 355 aa12.81□□□□□ -0.36
LRTM1-202ENST00000493075 XPNPEP1Q9NQW7 623 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms