RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 HERC4Q5GLZ8 1057 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 WASHC2DQ5SRD0 308 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 SCYL3Q8IZE3 742 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 FAM13CQ8NE31 585 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TTC8Q8TAM2 541 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 DTX3LQ8TDB6 740 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CARD9Q9H257 536 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 VAT1LQ9HCJ6 419 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 RHBDL2Q9NX52 303 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 AIPL1Q9NZN9 384 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 HDAC9Q9UKV0 1011 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 DIS3Q9Y2L1 958 aaKnown RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 PCDH11XQ9BZA7 1347 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 SLIT3O75094 1523 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 A0A1B0GVG6 124 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 RIPK2O43353 540 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 GFPT2O94808 682 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TNFAIP3P21580 790 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 MARK3P27448 753 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 GSTT1P30711 240 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CHRNA3P32297 505 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 STAT1P42224 750 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 KCNH2Q12809 1159 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TMED2Q15363 201 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 NPY5RQ15761 445 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CFAP157Q5JU67 520 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CHADLQ6NUI6 762 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 ZNF571Q7Z3V5 609 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 LCA5Q86VQ0 697 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 PDCD7Q8N8D1 485 aaKnown RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TBC1D16Q8TBP0 767 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 ASAP3Q8TDY4 903 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 UCMAQ8WVF2 138 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 DDX12PQ92771 950 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CEP63Q96MT8 703 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 SPZ1Q9BXG8 430 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 ROPN1BQ9BZX4 212 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 ROPN1Q9HAT0 212 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CCDC87Q9NVE4 849 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 NMRK1Q9NWW6 199 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TMOD4Q9NZQ9 345 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 ARPP21Q9UBL0 812 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 CNOT7Q9UIV1 285 aaKnown RBP6.71□□□□□ -1.34
VPS13D-209ENST00000487188 ZFP69BQ9UJL9 534 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 LRRC42Q9Y546 428 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 SPATA31A6Q5VVP1 1343 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SPATA31A3Q5VYP0 1347 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SYNGAP1Q96PV0 1343 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SNAP23O00161 211 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 PHF2O75151 1096 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ENTPD5O75356 428 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 GJB6O95452 261 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 GNA11P29992 359 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 POLGP54098 1239 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 PARP6Q2NL67 630 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 GALNTL6Q49A17 601 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SNX30Q5VWJ9 437 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 RNF43Q68DV7 783 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 DUPD1Q68J44 220 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 GALNT17Q6IS24 598 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CCDC62Q6P9F0 684 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SDCCAG8Q86SQ7 713 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ST13P4Q8IZP2 240 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SYNE4Q8N205 404 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CKAP2Q8WWK9 683 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ABTB1Q969K4 478 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 NDNQ99608 321 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 DMAP1Q9NPF5 467 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 PCDHA6Q9UN73 950 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 STX8Q9UNK0 236 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 PCDHA8Q9Y5H6 950 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 RIC1Q4ADV7 1423 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 MROH5Q6ZUA9 1318 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SPOPO43791 374 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 BAG3O95817 575 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 AFPP02771 609 aaKnown RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ZCCHC18P0CG32 403 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 TROVE2P10155 538 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 XRCC5P13010 732 aaKnown RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 NR2F2P24468 414 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 BCAMP50895 628 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CCNG1P51959 295 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 DEUP1Q05D60 604 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CCDC137Q6PK04 289 aaKnown RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 LRRC55Q6ZSA7 311 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 EXOC3L1Q86VI1 746 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 KIAA0825Q8IV33 1275 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ARHGAP24Q8N264 748 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ANKRD35Q8N283 1001 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 C4orf32Q8N8J7 132 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 C18orf8Q96DM3 657 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 LRMDAQ9H2I8 198 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 MKNK2Q9HBH9 465 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 SH3GLB2Q9NR46 395 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 METTL5Q9NRN9 209 aaKnown RBP6.7□□□□□ -1.34
VPS13D-209ENST00000487188 LMCD1Q9NZU5 365 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CTNNAL1Q9UBT7 734 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CAPN9O14815 690 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 CIB2O75838 187 aa6.7□□□□□ -1.34
VPS13D-209ENST00000487188 ECEL1O95672 775 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms