RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS41-213ENST00000485955 HECAQ9UBI9 543 aaPredicted RBP5.68□□□□□ -1.5
VPS41-213ENST00000485955 MSRAQ9UJ68 235 aa5.68□□□□□ -1.5
VPS41-213ENST00000485955 PDE8AO60658 829 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 OPHN1O60890 802 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 FKBP9O95302 570 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 CD40P25942 277 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 SESN2P58004 480 aaPredicted RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 BPIFB4P59827 614 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 ZXDAP98168 799 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 TCIRG1Q13488 830 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 SART3Q15020 963 aaKnown RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 ZBTB41Q5SVQ8 909 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 SPTY2D1Q68D10 685 aaPredicted RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 FKBP9P1Q75LS8 142 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 PASD1Q8IV76 773 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 ANKRD53Q8N9V6 530 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 RPGRQ92834 1020 aaKnown RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 EXTL1Q92935 676 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 GCDHQ92947 438 aaPredicted RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 SLC7A6OSQ96CW6 309 aaPredicted RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 SLC6A15Q9H2J7 730 aa5.67□□□□□ -1.5
VPS41-213ENST00000485955 POLR3BQ9NW08 1133 aaPredicted RBP5.67□□□□□ -1.5
VPS41-213ENST00000485955 PCDH8O95206 1070 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 LSSP48449 732 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 IL2P60568 153 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 PHC1P78364 1004 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 TERF2Q15554 542 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 ADGRE4PQ86SQ3 457 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 Q8N1X5 172 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 ZNF610Q8N9Z0 462 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 PLA2G15Q8NCC3 412 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 OR2W6PQ8NHA6 318 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 LPPQ93052 612 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 ZNF747Q9BV97 191 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 TMPRSS5Q9H3S3 457 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 MYPNQ86TC9 1320 aa5.66□□□□□ -1.5
VPS41-213ENST00000485955 A0A1W2PRX2 142 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 USP39Q53GS9 565 aaKnown RBP5.65□□□□□ -1.5
VPS41-213ENST00000485955 BROXQ5VW32 411 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 GAREM2Q75VX8 874 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 RNF180Q86T96 592 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 UBR7Q8N806 425 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 NOL10Q9BSC4 688 aaKnown RBP5.65□□□□□ -1.5
VPS41-213ENST00000485955 MSL2Q9HCI7 577 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 EMC7Q9NPA0 242 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 TLR9Q9NR96 1032 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 MAPRE3Q9UPY8 281 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 SH3BP1Q9Y3L3 701 aa5.65□□□□□ -1.5
VPS41-213ENST00000485955 UBE2QL1A1L167 161 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 PRSS38A1L453 326 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 GOLGA8BA8MQT2 603 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 TOX4O94842 621 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 HIBADHP31937 336 aaKnown RBP5.64□□□□□ -1.51
VPS41-213ENST00000485955 ID4P47928 161 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 GPR158Q5T848 1215 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 ESPNLQ6ZVH7 1005 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 STRA8Q7Z7C7 330 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 SGMS1Q86VZ5 419 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 THNSL2Q86YJ6 484 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 D2HGDHQ8N465 521 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 ANO3Q9BYT9 981 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 USP36Q9P275 1121 aaKnown RBP5.64□□□□□ -1.51
VPS41-213ENST00000485955 TMPRSS11EQ9UL52 423 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 SYNPO2Q9UMS6 1093 aa5.64□□□□□ -1.51
VPS41-213ENST00000485955 NEMP1O14524 444 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 DAPK3O43293 454 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 PFKMP08237 780 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 BPIP17213 487 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 LSP1P33241 339 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 KIR2DL3P43628 341 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 OCRLQ01968 901 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 CD69Q07108 199 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 CRIP3Q6Q6R5 217 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 RNF207Q6ZRF8 634 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 LYSMD2Q8IV50 215 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 IL17DQ8TAD2 202 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 PPP1R14CQ8TAE6 165 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 FAM89AQ96GI7 184 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 OSBPL6Q9BZF3 934 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 VPS11Q9H270 941 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 PRDM12Q9H4Q4 367 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS41-213ENST00000485955 USP18Q9UMW8 372 aa5.63□□□□□ -1.51
VPS41-213ENST00000485955 FSHBP01225 129 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 VSIG10L2P0DP72 767 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 GAAP10253 952 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 C6P13671 934 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 HSD3B2P26439 372 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 DGCR2P98153 550 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 FOXE3Q13461 319 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 DHCR24Q15392 516 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 DDB1Q16531 1140 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 NRN1LQ496H8 165 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 GAGE13Q4V321 117 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 ATP13A4Q4VNC1 1196 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 SDE2Q6IQ49 451 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 FAM111BQ6SJ93 734 aa5.62□□□□□ -1.51
VPS41-213ENST00000485955 CXorf67Q86X51 503 aaPredicted RBP5.62□□□□□ -1.51
VPS41-213ENST00000485955 PIK3C3Q8NEB9 887 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms