RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 PANK2Q9BZ23 570 aa13.14□□□□□ -0.31
HPS4-214ENST00000485842 ERVK-5Q9HDB9 667 aa13.14□□□□□ -0.31
HPS4-214ENST00000485842 RCOR1Q9UKL0 485 aa13.14□□□□□ -0.31
HPS4-214ENST00000485842 PCDHA7Q9UN72 937 aa13.14□□□□□ -0.31
HPS4-214ENST00000485842 ST3GAL5Q9UNP4 418 aa13.14□□□□□ -0.31
HPS4-214ENST00000485842 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
HPS4-214ENST00000485842 GBF1Q92538 1859 aa13.14□□□□□ -0.31
HPS4-214ENST00000485842 LRRIQ4A6NIV6 560 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 SOX1O00570 391 aaPredicted RBP13.13□□□□□ -0.31
HPS4-214ENST00000485842 GPR182O15218 404 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 ASAP2O43150 1006 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 HIP1RO75146 1068 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 AMHP03971 560 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 SFPQP23246 707 aaKnown RBP eCLIP13.13□□□□□ -0.31
HPS4-214ENST00000485842 GLRA2P23416 452 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 STAT6P42226 847 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 SLC12A3P55017 1021 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 MCM6Q14566 821 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 LRIT3Q3SXY7 679 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 AXDND1Q5T1B0 1012 aaPredicted RBP13.13□□□□□ -0.31
HPS4-214ENST00000485842 RRAGBQ5VZM2 374 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 FAM117BQ6P1L5 589 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 SHC4Q6S5L8 630 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.13□□□□□ -0.31
HPS4-214ENST00000485842 CATSPER4Q7RTX7 472 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 TMCO2Q7Z6W1 182 aaPredicted RBP13.13□□□□□ -0.31
HPS4-214ENST00000485842 MYOCDQ8IZQ8 938 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 KCTD17Q8N5Z5 321 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 SYT2Q8N9I0 419 aaPredicted RBP13.13□□□□□ -0.31
HPS4-214ENST00000485842 LINC01599Q8WXQ3 324 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 BSNDQ8WZ55 320 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 RAD54LQ92698 747 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 SLC9A7Q96T83 725 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 GDPD2Q9HCC8 539 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 BLOC1S4Q9NUP1 217 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 STK17AQ9UEE5 414 aa13.13□□□□□ -0.31
HPS4-214ENST00000485842 CIZ1Q9ULV3 898 aaPredicted RBP13.13□□□□□ -0.31
HPS4-214ENST00000485842 MYH11P35749 1972 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 A0A087X0B3 334 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 DENND3A2RUS2 1198 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 INO80B-WBP1J3KQ70 363 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 KRT18P05783 430 aaKnown RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 CACNB1Q02641 598 aaPredicted RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 CCDC73Q6ZRK6 1079 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 C1orf186Q6ZWK4 172 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 SRGAP1Q7Z6B7 1085 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 KIFAP3Q92845 792 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 LRCH3Q96II8 777 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 FTHL17Q9BXU8 183 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 INO80BQ9C086 356 aaPredicted RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 SCAND2PQ9GZW5 306 aaPredicted RBP13.12□□□□□ -0.31
HPS4-214ENST00000485842 TMX1Q9H3N1 280 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 MINDY3Q9H8M7 445 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 IFT122Q9HBG6 1241 aa13.12□□□□□ -0.31
HPS4-214ENST00000485842 NPHP3-ACAD11A0A0J9YXS1 232 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 MGEA5O60502 916 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 UPP2O95045 317 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 GUCY2CP25092 1073 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 RABGGTBP53611 331 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 PTENP60484 403 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 PPP2R5AQ15172 486 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 HERC6Q8IVU3 1022 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 ZBTB8OSQ8IWT0 167 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 DEPTORQ8TB45 409 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 IFT74Q96LB3 600 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 DRC1Q96MC2 740 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 ADAM2Q99965 735 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 ZBED2Q9BTP6 218 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 FAM13BQ9NYF5 915 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 CHMP5Q9NZZ3 219 aa13.11□□□□□ -0.31
HPS4-214ENST00000485842 PIN4Q9Y237 131 aaKnown RBP13.11□□□□□ -0.31
HPS4-214ENST00000485842 SFI1A8K8P3 1242 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 ENPP3O14638 875 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 ERLIN2O94905 339 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 ZSCAN20P17040 1043 aaPredicted RBP13.1□□□□□ -0.31
HPS4-214ENST00000485842 LIG1P18858 919 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 PBX2P40425 430 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 NAMPTP43490 491 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 SMAD3P84022 425 aaKnown RBP13.1□□□□□ -0.31
HPS4-214ENST00000485842 MAPK7Q13164 816 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 DMP1Q13316 513 aaPredicted RBP13.1□□□□□ -0.31
HPS4-214ENST00000485842 NAALADL2Q58DX5 795 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 RESP18Q5W5W9 173 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 RTN4RL1Q86UN2 441 aaPredicted RBP13.1□□□□□ -0.31
HPS4-214ENST00000485842 DAW1Q8N136 415 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 PHOSPHO2Q8TCD6 241 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 DHX58Q96C10 678 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 REEP2Q9BRK0 252 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 KIFC3Q9BVG8 833 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 TIPINQ9BVW5 301 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 TSPYL2Q9H2G4 693 aaPredicted RBP13.1□□□□□ -0.31
HPS4-214ENST00000485842 KCND2Q9NZV8 630 aa13.1□□□□□ -0.31
HPS4-214ENST00000485842 CCDC169A6NNP5 214 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 TLL1O43897 1013 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 TBCAO75347 108 aaKnown RBP13.09□□□□□ -0.31
HPS4-214ENST00000485842 FAM13AO94988 1023 aa13.09□□□□□ -0.31
HPS4-214ENST00000485842 MYOGP15173 224 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms