RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 KCNQ1P51787 676 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 POLGP54098 1239 aaPredicted RBP18.53■□□□□ 0.56
TRIM54-203ENST00000485306 ORC2Q13416 577 aaPredicted RBP18.53■□□□□ 0.56
TRIM54-203ENST00000485306 ATL3Q6DD88 541 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 ZNF410Q86VK4 478 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 RHPN2Q8IUC4 686 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 MTMR9Q96QG7 549 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 LXNQ9BS40 222 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 UBE2ZQ9H832 354 aaPredicted RBP18.53■□□□□ 0.56
TRIM54-203ENST00000485306 DACT1Q9NYF0 836 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 ZDHHC9Q9Y397 364 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 PCDHB12Q9Y5F1 795 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 SPTBN5Q9NRC6 3674 aaKnown RBP18.53■□□□□ 0.56
TRIM54-203ENST00000485306 TCF20Q9UGU0 1960 aaKnown RBP18.52■□□□□ 0.56
TRIM54-203ENST00000485306 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.52■□□□□ 0.56
TRIM54-203ENST00000485306 TBKBP1A7MCY6 615 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 GRM6O15303 877 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 SFPQP23246 707 aaKnown RBP eCLIP18.52■□□□□ 0.56
TRIM54-203ENST00000485306 YWHABP31946 246 aaKnown RBP18.52■□□□□ 0.56
TRIM54-203ENST00000485306 MCM7P33993 719 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 RFC5P40937 340 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 NPEPPSP55786 919 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 DRP2Q13474 957 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 FAM102BQ5T8I3 360 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 PLA2G4FQ68DD2 849 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 TPH2Q8IWU9 490 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 DYDC2Q96IM9 177 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 TMEM60Q9H2L4 133 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 TTC12Q9H892 705 aaPredicted RBP18.52■□□□□ 0.56
TRIM54-203ENST00000485306 CHST12Q9NRB3 414 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 RGL1Q9NZL6 768 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 PLAGL2Q9UPG8 496 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 TTC28Q96AY4 2481 aa18.52■□□□□ 0.56
TRIM54-203ENST00000485306 REV3LO60673 3130 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 A0A087WZ62 844 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 GAS2O43903 313 aaKnown RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 TXKP42681 527 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 GATMP50440 423 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 CTTNQ14247 550 aaKnown RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 TCEAL5Q5H9L2 206 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 ABI1Q8IZP0 508 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 NEK9Q8TD19 979 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 TCP11Q8WWU5 503 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 PPP2R3CQ969Q6 453 aa18.51■□□□□ 0.55
TRIM54-203ENST00000485306 ZNF396Q96N95 335 aaPredicted RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 FDXACB1Q9BRP7 624 aaPredicted RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 ALG13Q9NP73 1137 aaKnown RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 WRAP73Q9P2S5 460 aaPredicted RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 FNDC1Q4ZHG4 1894 aaPredicted RBP18.51■□□□□ 0.55
TRIM54-203ENST00000485306 ASAP2O43150 1006 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 SLITRK3O94933 977 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 EOMESO95936 686 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 CYP4A11Q02928 519 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 ZNF174Q15697 407 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 CSPP1Q1MSJ5 1256 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 XKR9Q5GH70 373 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 TTC38Q5R3I4 469 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 KLHL23Q8NBE8 558 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 PSPC1Q8WXF1 523 aaKnown RBP18.5■□□□□ 0.55
TRIM54-203ENST00000485306 NLRP4Q96MN2 994 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 EIF2AK1Q9BQI3 630 aaKnown RBP18.5■□□□□ 0.55
TRIM54-203ENST00000485306 TMEM117Q9H0C3 514 aa18.5■□□□□ 0.55
TRIM54-203ENST00000485306 DHX33Q9H6R0 707 aaKnown RBP18.5■□□□□ 0.55
TRIM54-203ENST00000485306 A0A0U1RQF3 1178 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 CSDE1O75534 798 aaKnown RBP18.49■□□□□ 0.55
TRIM54-203ENST00000485306 BMP15O95972 392 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 ITGB1P05556 798 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 FGFR1P11362 822 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 FGFR4P22455 802 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 KCNA5P22460 613 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 LEXMQ3ZCV2 418 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 FOXD4L5Q5VV16 416 aaPredicted RBP18.49■□□□□ 0.55
TRIM54-203ENST00000485306 EP400NLQ6ZTU2 488 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 ECHDC2Q86YB7 292 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 ZNF579Q8NAF0 562 aaKnown RBP18.49■□□□□ 0.55
TRIM54-203ENST00000485306 RNF169Q8NCN4 708 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 SPPL3Q8TCT6 385 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 FOXD4L4Q8WXT5 416 aaPredicted RBP18.49■□□□□ 0.55
TRIM54-203ENST00000485306 PABPC5Q96DU9 382 aaKnown RBP18.49■□□□□ 0.55
TRIM54-203ENST00000485306 HSD17B14Q9BPX1 270 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 TYW1Q9NV66 732 aaKnown RBP18.49■□□□□ 0.55
TRIM54-203ENST00000485306 COL4A3BPQ9Y5P4 624 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 BRWD1Q9NSI6 2320 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 KIAA1671Q9BY89 1806 aa18.49■□□□□ 0.55
TRIM54-203ENST00000485306 NCOR1O75376 2440 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 LYPLA2O95372 231 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 SKIP12755 728 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 UBE3AQ05086 875 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 PUS10Q3MIT2 529 aaKnown RBP18.48■□□□□ 0.55
TRIM54-203ENST00000485306 CATSPER4Q7RTX7 472 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 KSR1Q8IVT5 923 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 POF1BQ8WVV4 589 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 PRPF31Q8WWY3 499 aaKnown RBP18.48■□□□□ 0.55
TRIM54-203ENST00000485306 TMEM143Q96AN5 459 aa18.48■□□□□ 0.55
TRIM54-203ENST00000485306 CCDC43Q96MW1 224 aaKnown RBP18.48■□□□□ 0.55
TRIM54-203ENST00000485306 POTEMA6NI47 508 aa18.47■□□□□ 0.55
TRIM54-203ENST00000485306 OR52Z1P0C646 297 aa18.47■□□□□ 0.55
TRIM54-203ENST00000485306 SRGAP2CP0DJJ0 459 aa18.47■□□□□ 0.55
TRIM54-203ENST00000485306 XRCC6P12956 609 aaKnown RBP eCLIP18.47■□□□□ 0.55
TRIM54-203ENST00000485306 LAG3P18627 525 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms