RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SYN1P17600 705 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 HGFACQ04756 655 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 FSCN1Q16658 493 aaKnown RBP8.23□□□□□ -1.09
USP40-213ENST00000483216 MAN2A1Q16706 1144 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 CCDC178Q5BJE1 867 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 GLB1LQ6UWU2 654 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 ZCRB1Q8TBF4 217 aaKnown RBP8.23□□□□□ -1.09
USP40-213ENST00000483216 CFHR4Q92496 578 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 LMF1Q96S06 567 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 PTPN18Q99952 460 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 SOX7Q9BT81 388 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 BRINP2Q9C0B6 783 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 DNAI1Q9UI46 699 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 COL4A3BPQ9Y5P4 624 aa8.23□□□□□ -1.09
USP40-213ENST00000483216 PMS2P1A4D2B8 440 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 ANKRD62A6NC57 917 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 K7ESF4 209 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 MATN2O00339 956 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 CLEC2LP0C7M8 214 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 PLP2Q04941 152 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 PITRM1Q5JRX3 1037 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 NECAB2Q7Z6G3 386 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 CLEC14AQ86T13 490 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 LYSMD2Q8IV50 215 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 SLC41A1Q8IVJ1 513 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 LMBR1Q8WVP7 490 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 PCDH12Q9NPG4 1184 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 PUF60Q9UHX1 559 aaKnown RBP8.22□□□□□ -1.09
USP40-213ENST00000483216 PRSS50Q9UI38 385 aa8.22□□□□□ -1.09
USP40-213ENST00000483216 C2orf78A6NCI8 922 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 DAPK3O43293 454 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 FSBPO95073 299 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 CDK11BP21127 795 aaKnown RBP8.21□□□□□ -1.1
USP40-213ENST00000483216 ENPP1P22413 925 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 LCE4AQ5TA78 99 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 CCDC62Q6P9F0 684 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 OR14K1Q8NGZ2 314 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 GAB3Q8WWW8 586 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 SLC7A6OSQ96CW6 309 aaPredicted RBP8.21□□□□□ -1.1
USP40-213ENST00000483216 AHCYL2Q96HN2 611 aaKnown RBP8.21□□□□□ -1.1
USP40-213ENST00000483216 PUS7LQ9H0K6 701 aaKnown RBP8.21□□□□□ -1.1
USP40-213ENST00000483216 SLC5A4Q9NY91 659 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 USP18Q9UMW8 372 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 OAZ3Q9UMX2 235 aa8.21□□□□□ -1.1
USP40-213ENST00000483216 GOLGA8AA7E2F4 631 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 GOLGA8BA8MQT2 603 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 GPR42O15529 346 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 SEC24DO94855 1032 aaPredicted RBP8.2□□□□□ -1.1
USP40-213ENST00000483216 CELA3BP08861 270 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 HNRNPLP14866 589 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP40-213ENST00000483216 CR2P20023 1033 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 ADCY7P51828 1080 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 PTPROQ16827 1216 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 UGT8Q16880 541 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 CT83Q5H943 113 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 LIMS2Q7Z4I7 341 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 CIR1Q86X95 450 aaPredicted RBP8.2□□□□□ -1.1
USP40-213ENST00000483216 OR14C36Q8NHC7 312 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 COG1Q8WTW3 980 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 GCDHQ92947 438 aaPredicted RBP8.2□□□□□ -1.1
USP40-213ENST00000483216 EAF2Q96CJ1 260 aaPredicted RBP8.2□□□□□ -1.1
USP40-213ENST00000483216 LRRC37BQ96QE4 947 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 ORAI2Q96SN7 254 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 SLC6A15Q9H2J7 730 aa8.2□□□□□ -1.1
USP40-213ENST00000483216 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP40-213ENST00000483216 NRP2O60462 931 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 XPAP23025 273 aaPredicted RBP8.19□□□□□ -1.1
USP40-213ENST00000483216 CDKN1CP49918 316 aaPredicted RBP8.19□□□□□ -1.1
USP40-213ENST00000483216 ERVK-21P61565 698 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 TRIM25Q14258 630 aaKnown RBP8.19□□□□□ -1.1
USP40-213ENST00000483216 TAX1BP1Q86VP1 789 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 CMIPQ8IY22 773 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 PLA2G15Q8NCC3 412 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 RABGGTAQ92696 567 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 MENTQ9BUN1 341 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 C14orf119Q9NWQ9 140 aa8.19□□□□□ -1.1
USP40-213ENST00000483216 K7ESM1 405 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 SLC26A4O43511 780 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 SCAND1P57086 179 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 ATP2C1P98194 919 aaPredicted RBP8.18□□□□□ -1.1
USP40-213ENST00000483216 PPARAQ07869 468 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 UNC5BQ8IZJ1 945 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 PRPF38AQ8NAV1 312 aaKnown RBP8.18□□□□□ -1.1
USP40-213ENST00000483216 RAX2Q96IS3 184 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 SAMD11Q96NU1 681 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 DPYSL5Q9BPU6 564 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 KCTD10Q9H3F6 313 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 C12orf65Q9H3J6 166 aaKnown RBP8.18□□□□□ -1.1
USP40-213ENST00000483216 PRDM12Q9H4Q4 367 aa8.18□□□□□ -1.1
USP40-213ENST00000483216 RBM8AQ9Y5S9 174 aaKnown RBP8.18□□□□□ -1.1
USP40-213ENST00000483216 CDC14BO60729 498 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 LPLP06858 475 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 GAAP10253 952 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 NRG3P56975 720 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 MRPS9P82933 396 aaKnown RBP8.17□□□□□ -1.1
USP40-213ENST00000483216 DUSP8Q13202 625 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 TCIRG1Q13488 830 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP40-213ENST00000483216 GAGE13Q4V321 117 aa8.17□□□□□ -1.1
USP40-213ENST00000483216 GAREM2Q75VX8 874 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms