RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 LRRC63Q05C16 580 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 TYRO3Q06418 890 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 RBL2Q08999 1139 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 PTK7Q13308 1070 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 NFIL3Q16649 462 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 FAM187BQ17R55 369 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 FAM102BQ5T8I3 360 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 EPM2AIP1Q7L775 607 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-225ENST00000481502 SRGAP1Q7Z6B7 1085 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 SERINC5Q86VE9 423 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 GRAMD1CQ8IYS0 662 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 MYOCDQ8IZQ8 938 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 ADSSL1Q8N142 457 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 GOLGA5Q8TBA6 731 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 STAMQ92783 540 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 FIZ1Q96SL8 496 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 MCOLN1Q9GZU1 580 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 MRPL44Q9H9J2 332 aaKnown RBP9.11□□□□□ -0.95
SYNE1-225ENST00000481502 SETD4Q9NVD3 440 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 ARHGAP28Q9P2N2 729 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 SUCLA2Q9P2R7 463 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-225ENST00000481502 PCNTO95613 3336 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 A0A087WWV3 80 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 SMTNL1A8MU46 457 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 PDXKO00764 312 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 IKBKBO14920 756 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 PPP1R37O75864 691 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 FGFR1OPO95684 399 aaKnown RBP9.1□□□□□ -0.95
SYNE1-225ENST00000481502 PTGS1P23219 599 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 GLRA2P23416 452 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 NPTX2P47972 431 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 PTENP60484 403 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 POU5F1Q01860 360 aaKnown RBP9.1□□□□□ -0.95
SYNE1-225ENST00000481502 LAMTOR4Q0VGL1 99 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 STK4Q13043 487 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 SNX17Q15036 470 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 EDRF1Q3B7T1 1238 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 FAM26DQ5JW98 314 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 CDCA2Q69YH5 1023 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-225ENST00000481502 CENPPQ6IPU0 288 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 ANKRD33Q7Z3H0 272 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 HAUS6Q7Z4H7 955 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 ZBTB8OSQ8IWT0 167 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 KIAA0319LQ8IZA0 1049 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 CCDC155Q8N6L0 562 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 USP38Q8NB14 1042 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 TMEM161BQ8NDZ6 487 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 CAGE1Q8TC20 777 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 ENOX1Q8TC92 643 aaKnown RBP9.1□□□□□ -0.95
SYNE1-225ENST00000481502 PRPF31Q8WWY3 499 aaKnown RBP9.1□□□□□ -0.95
SYNE1-225ENST00000481502 VTI1AQ96AJ9 217 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 POLR3FQ9H1D9 316 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-225ENST00000481502 SUGCTQ9HAC7 445 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 KMT5AQ9NQR1 393 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 RWDD2AQ9UIY3 292 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 TRAF3IP3Q9Y228 551 aa9.1□□□□□ -0.95
SYNE1-225ENST00000481502 CEP350Q5VT06 3117 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 GRIN2DO15399 1336 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 TMEM150BA6NC51 233 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 PPP1R3GB7ZBB8 358 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 K7ERI5 159 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 TLR3O15455 904 aaKnown RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 PIGRP01833 764 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 CYP2C9P11712 490 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 BMP6P22004 513 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 CCNE1P24864 410 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 PHKA2P46019 1235 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 CRYBB1P53674 252 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 PEX3P56589 373 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 NCBP1Q09161 790 aaKnown RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 PTGISQ16647 500 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 MAPK6Q16659 721 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 KNOP1Q1ED39 458 aaKnown RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 L1TD1Q5T7N2 865 aaKnown RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 SLFN12LQ6IEE8 588 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 ZPBP2Q6X784 338 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 SFR1Q86XK3 245 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 SLC9A9Q8IVB4 645 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 MAP4K3Q8IVH8 894 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 C12orf56Q8IXR9 622 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 METTL13Q8N6R0 699 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 KIAA0895Q8NCT3 520 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 DEPTORQ8TB45 409 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 FAM200AQ8TCP9 573 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 NOC3LQ8WTT2 800 aaKnown RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 ACCSQ96QU6 501 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 GCOM2Q9BZD3 368 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 FZD8Q9H461 694 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 TSPY26PQ9H489 355 aa9.09□□□□□ -0.95
SYNE1-225ENST00000481502 PRMT7Q9NVM4 692 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-225ENST00000481502 NPHP3-ACAD11A0A0J9YXS1 232 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 DCDC2CA8MYV0 355 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 RSPH10B2B2RC85 870 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 M0QZ92 97 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 PITPNM1O00562 1244 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 ACKR2O00590 384 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 MAPK13O15264 365 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 TREHO43280 583 aa9.08□□□□□ -0.96
SYNE1-225ENST00000481502 CALUO43852 315 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-225ENST00000481502 GCNT3O95395 438 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms