RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SPINK2P20155 84 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 NT5C2P49902 561 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 IGBP1P78318 339 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 TMEM266Q2M3C6 531 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 COL28A1Q2UY09 1125 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 C1orf228Q6PIY5 440 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 SEPT1Q8WYJ6 367 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 TBC1D5Q92609 795 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 IGSF21Q96ID5 467 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 UBL7Q96S82 380 aaPredicted RBP9.27□□□□□ -0.93
USP54-211ENST00000474929 MKNK1Q9BUB5 465 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 EDEM2Q9BV94 578 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 PHF20Q9BVI0 1012 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 AMNQ9BXJ7 453 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 SCUBE2Q9NQ36 999 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 CDH7Q9ULB5 785 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 MYO18BQ8IUG5 2567 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 ZC3H11AO75152 810 aaKnown RBP eCLIP9.26□□□□□ -0.937e-6■■■□□ 18.7
USP54-211ENST00000474929 NTRK1P04629 796 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 URODP06132 367 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 MARK3P27448 753 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 TMEM62Q0P6H9 643 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 TROAPQ12815 778 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 WTAPQ15007 396 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 ASPRV1Q53RT3 343 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 SH3PXD2AQ5TCZ1 1133 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 NLRX1Q86UT6 975 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 AUTS2Q8WXX7 1259 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 OSBP2Q969R2 916 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 ARRDC1-AS1Q9H2J1 176 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 AZI2Q9H6S1 392 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 ST3GAL5Q9UNP4 418 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 GINS2Q9Y248 185 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 FRMPD4Q14CM0 1322 aa9.26□□□□□ -0.93
USP54-211ENST00000474929 MAP3K13O43283 966 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 HRO43593 1189 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 DHX16O60231 1041 aaKnown RBP9.25□□□□□ -0.93
USP54-211ENST00000474929 AKAP3O75969 853 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 CNPP09543 421 aaKnown RBP9.25□□□□□ -0.93
USP54-211ENST00000474929 PLA2G2AP14555 144 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 INSRRP14616 1297 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 FSHRP23945 695 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 HOXA6P31267 233 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 MPLP40238 635 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 SLC26A2P50443 739 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 CRYBB1P53674 252 aaPredicted RBP9.25□□□□□ -0.93
USP54-211ENST00000474929 SP4Q02446 784 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 LRRC32Q14392 662 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 QRICH1Q2TAL8 776 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 PLA2G2CQ5R387 149 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 CACNA2D4Q7Z3S7 1137 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 SPEM1Q8N4L4 309 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 KBTBD3Q8NAB2 608 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 LSM14AQ8ND56 463 aaKnown RBP9.25□□□□□ -0.93
USP54-211ENST00000474929 FGF14Q92915 247 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 MSANTD3Q96H12 275 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 SLC32A1Q9H598 525 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 TOMM22Q9NS69 142 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 DACT1Q9NYF0 836 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 NOC2LQ9Y3T9 749 aaKnown RBP9.25□□□□□ -0.93
USP54-211ENST00000474929 USP9XQ93008 2570 aaPredicted RBP9.25□□□□□ -0.93
USP54-211ENST00000474929 SPAG17Q6Q759 2223 aa9.25□□□□□ -0.93
USP54-211ENST00000474929 GCOM1H8Y6P7 765 aaPredicted RBP9.24□□□□□ -0.93
USP54-211ENST00000474929 RNF113AO15541 343 aaKnown RBP9.24□□□□□ -0.93
USP54-211ENST00000474929 RAB11FIP3O75154 756 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 CHGBP05060 677 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 POLR2MP0CAP2 368 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 PCP11498 1178 aaKnown RBP9.24□□□□□ -0.93
USP54-211ENST00000474929 CD72P21854 359 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 CREMQ03060 361 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 DSC3Q14574 896 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 CCDC178Q5BJE1 867 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 CEP85Q6P2H3 762 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 C19orf48Q6RUI8 117 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 PARM1Q6UWI2 310 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 ZNF605Q86T29 641 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 WDR5BQ86VZ2 330 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 ECHDC2Q86YB7 292 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 ADGRF4Q8IZF3 695 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 IL31RAQ8NI17 732 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 GPKOWQ92917 476 aaPredicted RBP eCLIP9.24□□□□□ -0.93
USP54-211ENST00000474929 BBC3Q96PG8 261 aaPredicted RBP9.24□□□□□ -0.93
USP54-211ENST00000474929 HNRNPABQ99729 332 aaKnown RBP9.24□□□□□ -0.93
USP54-211ENST00000474929 PRKD2Q9BZL6 878 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 RNF19AQ9NV58 838 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 ANAPC4Q9UJX5 808 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 RAI2Q9Y5P3 530 aa9.24□□□□□ -0.93
USP54-211ENST00000474929 AKAP13Q12802 2813 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 HECTD1Q9ULT8 2610 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 CCDC163A0A0D9SF12 145 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 FAM221BA6H8Z2 402 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 CHURC1-FNTBB4DL54 471 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 NT5C1B-RDH14C9J2C7 533 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 J3QKU1 62 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 AXIN1O15169 862 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 HMMRO75330 724 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 SKIP12755 728 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 RAP1GAPP47736 663 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 FNTBP49356 437 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 RNASELQ05823 741 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms