RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RRP1BQ14684 758 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 IFI16Q16666 785 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 TBC1D9BQ66K14 1250 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 TMEM126BQ8IUX1 230 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 AGGF1Q8N302 714 aaeCLIP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 NAF1Q96HR8 494 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 SH3GL3Q99963 347 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 VPS16Q9H269 839 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 LRRC4CQ9HCJ2 640 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 USP21Q9UK80 565 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 PLAAQ9Y263 795 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 STARD13Q9Y3M8 1113 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 EDF1O60869 148 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 NLRP5P59047 1200 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 TXNRD1Q16881 649 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 TRPM8Q7Z2W7 1104 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 SMYD4Q8IYR2 804 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 STKLD1Q8NE28 680 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 FBXO25Q8TCJ0 367 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 DYDC1Q8WWB3 177 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 HVCN1Q96D96 273 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 HSD17B14Q9BPX1 270 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 MRIQ9BWK5 157 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 AVENQ9NQS1 362 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 EFR3BQ9Y2G0 817 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 PCDHGA4Q9Y5G9 962 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 V9GY48 417 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 GOLGA6L10A0A0M3HER8 536 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 ATP5J2-PTCD1G3V325 749 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 GRM2Q14416 872 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 CAVIN4Q5BKX8 364 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 EFHC2Q5JST6 749 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 DCAF12L1Q5VU92 463 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 LDHAL6AQ6ZMR3 332 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 CHSY1Q86X52 802 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RBM12BQ8IXT5 1001 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 METTL13Q8N6R0 699 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 CERKQ8TCT0 537 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 NLRP4Q96MN2 994 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 USP40Q9NVE5 1235 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 MAD2L2Q9UI95 211 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 COL4A3BPQ9Y5P4 624 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 TMEM110-MUSTN1A8MSY1 372 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RASA4BC9J798 803 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RASA4O43374 803 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 LMNB1P20700 586 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 CSRP3P50461 194 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 WDR4P57081 412 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RAB15P59190 212 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 SULT2A1Q06520 285 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 HSP90AA4PQ58FG1 418 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RNF187Q5TA31 235 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 KCNK18Q7Z418 384 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RBM46Q8TBY0 533 aaKnown RBP5.79□□□□□ -1.48
SYNE1-220ENST00000471834 SHC3Q92529 594 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF333Q96JL9 665 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 CRAMP1Q96RY5 1269 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 RXFP1Q9HBX9 757 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 KCND2Q9NZV8 630 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 SENP1Q9P0U3 644 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 LAMB1P07942 1786 aa5.79□□□□□ -1.48
SYNE1-220ENST00000471834 AHDC1Q5TGY3 1603 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 UNCXA6NJT0 531 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 TGFB1I1O43294 461 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 FGFR1OPO95684 399 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 A1BGP04217 495 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 IDO1P14902 403 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 UCHL3P15374 230 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 NR1H3Q13133 447 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 SYDE1Q6ZW31 735 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 FAM13CQ8NE31 585 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 STK32AQ8WU08 396 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 TAF4BQ92750 862 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 GDAP1L1Q96MZ0 367 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 CD248Q9HCU0 757 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 PARP2Q9UGN5 583 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 NOCTQ9UK39 431 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 GTF3C4Q9UKN8 822 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 PRKAB2O43741 272 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 TM4SF1P30408 202 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 NONOQ15233 471 aaKnown RBP eCLIP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 SPA17Q15506 151 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 BRDTQ58F21 947 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 IRAK1BP1Q5VVH5 260 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 LNX1Q8TBB1 728 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 RAD54LQ92698 747 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 FAM84BQ96KN1 310 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 LUC7LQ9NQ29 371 aaKnown RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC87Q9NVE4 849 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 UMODL1Q5DID0 1318 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ATRNL1Q5VV63 1379 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 DCDC2CA8MYV0 355 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 MAGEC1O60732 1142 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 COQ9O75208 318 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 STARD3NLO95772 234 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 ALDH1B1P30837 517 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 KIAA1755Q5JYT7 1200 aa5.78□□□□□ -1.48
SYNE1-220ENST00000471834 SPTY2D1Q68D10 685 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-220ENST00000471834 TTC27Q6P3X3 843 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms