RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 ULK4Q96C45 1275 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ASIC4Q96FT7 647 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 EPB41L5Q9HCM4 733 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ASNSD1Q9NWL6 643 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 TBK1Q9UHD2 729 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 PYGBP11216 843 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ITPK1Q13572 414 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 PKP1Q13835 747 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 TTLL4Q14679 1199 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 VEPH1Q14D04 833 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 RBBP7Q16576 425 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 RASIP1Q5U651 963 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 PPP4R3CPQ6ZMV5 832 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 LRRC37BQ96QE4 947 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ZFYVE28Q9HCC9 887 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 NGRNQ9NPE2 291 aaKnown RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 STX18Q9P2W9 335 aaKnown RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 STAP2Q9UGK3 403 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 RWDD2AQ9UIY3 292 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 GDAQ9Y2T3 454 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 L3MBTL1Q9Y468 752 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 WASHC5Q12768 1159 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 NKX1-1Q15270 411 aaPredicted RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 PPP2R3CQ969Q6 453 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 SLC4A7Q9Y6M7 1214 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 USP32Q8NFA0 1604 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 MAPK6Q16659 721 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 ZC3H12BQ5HYM0 836 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 TOGARAM2Q6ZUX3 1019 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 SLC35F6Q8N357 371 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 SH3TC2Q8TF17 1288 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 EPAS1Q99814 870 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.3□□□□□ -0.92
HPS4-209ENST00000466781 SARS2Q9NP81 518 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 ZNF302Q9NR11 478 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 KIF17Q9P2E2 1029 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 ANGPTL2Q9UKU9 493 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 CLCA2Q9UQC9 943 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 RGS12O14924 1447 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 MMP1P03956 469 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 IGKV5-2P06315 115 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 DDX5P17844 614 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 TGFB2P61812 414 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 SREBF2Q12772 1141 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 ZSCAN26Q16670 478 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 KCTD16Q68DU8 428 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 EEF2KMTQ96G04 330 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 DDX50Q9BQ39 737 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 HINFPQ9BQA5 517 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 TXLNGQ9NUQ3 528 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 FGFR1OP2Q9NVK5 253 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 MAP3K20Q9NYL2 800 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 WDR91A4D1P6 747 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 IPO5O00410 1097 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 ENC1O14682 589 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 FTCDO95954 541 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 CPB1P15086 417 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 CDC25BP30305 580 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 COPB2P35606 906 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 AP3B2Q13367 1082 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 PPP6R3Q5H9R7 873 aaPredicted RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 STRIP1Q5VSL9 837 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 APOA5Q6Q788 366 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 TTC8Q8TAM2 541 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 RAVER2Q9HCJ3 691 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 MAN1B1Q9UKM7 699 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 CAPN11Q9UMQ6 739 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 PSMD14O00487 310 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 CLDN3O15551 220 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 MYO1DO94832 1006 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 SYF2O95926 243 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 PRELPP51888 382 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 DDX53Q86TM3 631 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 RASSF3Q86WH2 238 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 SMYD4Q8IYR2 804 aaPredicted RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 EFHBQ8N7U6 833 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 ENOX1Q8TC92 643 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 CDV3Q9UKY7 258 aaKnown RBP9.3□□□□□ -0.92
HPS4-209ENST00000466781 STRIP2Q9ULQ0 834 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 MTMR6Q9Y217 621 aa9.3□□□□□ -0.92
HPS4-209ENST00000466781 PRPF3O43395 683 aaKnown RBP9.29□□□□□ -0.92
HPS4-209ENST00000466781 CYP21A2P08686 494 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 PLCG1P19174 1290 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 ATICP31939 592 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 GCKP35557 465 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 DR1Q01658 176 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 COL23A1Q86Y22 540 aaPredicted RBP9.29□□□□□ -0.92
HPS4-209ENST00000466781 YIPF2Q9BWQ6 316 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 C2orf40Q9H1Z8 148 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.29□□□□□ -0.92
HPS4-209ENST00000466781 A0A1W2PQ27 194 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 A0A1W2PQ64 194 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 A0A1W2PQD8 194 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 CELF2O95319 508 aaKnown RBP9.29□□□□□ -0.92
HPS4-209ENST00000466781 RALAP11233 206 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 SNRNP48Q6IEG0 339 aaKnown RBP9.29□□□□□ -0.92
HPS4-209ENST00000466781 TADA2BQ86TJ2 420 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 CRLF3Q8IUI8 442 aa9.29□□□□□ -0.92
HPS4-209ENST00000466781 TRMT2AQ8IZ69 625 aaKnown RBP9.29□□□□□ -0.92
HPS4-209ENST00000466781 SLC26A7Q8TE54 656 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms