RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 ZNF697Q5TEC3 545 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 CATSPER4Q7RTX7 472 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 RTN4RL1Q86UN2 441 aaPredicted RBP13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 DEFB123Q8N688 67 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 RNF169Q8NCN4 708 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 LINC00301Q8NCQ3 95 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 MCPH1Q8NEM0 835 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 PHOSPHO2Q8TCD6 241 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 LINC01599Q8WXQ3 324 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 SYMPKQ92797 1274 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 AK8Q96MA6 479 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 RUSC1Q9BVN2 902 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 FTHL17Q9BXU8 183 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 NT5C3AQ9H0P0 336 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 CERS4Q9HA82 394 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 LRFN2Q9ULH4 789 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 SQORQ9Y6N5 450 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 MYO9BQ13459 2157 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 TCHHQ07283 1943 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 CHD9Q3L8U1 2897 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 MYH11P35749 1972 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ASAP2O43150 1006 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 CA3P07451 260 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 PLA2G4BP0C869 781 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ZSCAN20P17040 1043 aaPredicted RBP13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 CYP11B2P19099 503 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 PLCG1P19174 1290 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 SFPQP23246 707 aaKnown RBP eCLIP13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 GLRA2P23416 452 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ARL2P36404 184 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ANP32AP39687 249 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 PHKA2P46019 1235 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ME1P48163 572 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 NASPP49321 788 aaPredicted RBP13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 CAPSQ13938 189 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 MXD4Q14582 209 aaPredicted RBP13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ZNF410Q86VK4 478 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 ZNF710Q8N1W2 664 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 MINDY3Q9H8M7 445 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 SLC28A3Q9HAS3 691 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 IFT122Q9HBG6 1241 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 PCDHA11Q9Y5I1 949 aa13.35□□□□□ -0.27
SHROOM3-202ENST00000466541 NPHP3-ACAD11A0A0J9YXS1 232 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 LCHNA4D1U4 455 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 INO80B-WBP1J3KQ70 363 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 GJB5O95377 273 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 TXLNAP40222 546 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 MCM6Q14566 821 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 LONRF3Q496Y0 759 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 TMEM119Q4V9L6 283 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 PPP2R2DQ66LE6 453 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 RINT1Q6NUQ1 792 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 PDILTQ8N807 584 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 TOP1MTQ969P6 601 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 YME1L1Q96TA2 773 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 RAD9AQ99638 391 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 INO80BQ9C086 356 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 TSPYL2Q9H2G4 693 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 ZNF576Q9H609 170 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 CCDC39Q9UFE4 941 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 CFAP45Q9UL16 551 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 MTUS1Q9ULD2 1270 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 PIN4Q9Y237 131 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 TTC3P53804 2025 aa13.34□□□□□ -0.27
SHROOM3-202ENST00000466541 CCDC169A6NNP5 214 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 SFI1A8K8P3 1242 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 HIP1RO75146 1068 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 ERLIN2O94905 339 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 YEATS4O95619 227 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 KRT18P05783 430 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 CACNB1Q02641 598 aaPredicted RBP13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 TMEM132AQ24JP5 1023 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 PAN2Q504Q3 1202 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 HYIQ5T013 277 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 RRAGBQ5VZM2 374 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 TWF2Q6IBS0 349 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 GPBP1Q86WP2 473 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 DEPTORQ8TB45 409 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 LRRC15Q8TF66 581 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 BSNDQ8WZ55 320 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 IFT74Q96LB3 600 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 KIFC3Q9BVG8 833 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 TTYH1Q9H313 450 aaPredicted RBP13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 SEMA6BQ9H3T3 888 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 PCDHB7Q9Y5E2 793 aa13.33□□□□□ -0.28
SHROOM3-202ENST00000466541 ARHGEF15O94989 841 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 SARSP49591 514 aaKnown RBP13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 GATMP50440 423 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 PTENP60484 403 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 C1orf186Q6ZWK4 172 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 SLC24A5Q71RS6 500 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 SPRED2Q7Z698 418 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 SRGAP1Q7Z6B7 1085 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 ZBTB8OSQ8IWT0 167 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 SYT2Q8N9I0 419 aaPredicted RBP13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 KCNG4Q8TDN1 519 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 ARNTL2Q8WYA1 636 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 RAD54LQ92698 747 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 KIFAP3Q92845 792 aa13.32□□□□□ -0.28
SHROOM3-202ENST00000466541 CPB2Q96IY4 423 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms