RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PRKCEQ02156 737 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 CAMK1Q14012 370 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 SF3A1Q15459 793 aaKnown RBP19.78■□□□□ 0.76
COL7A1-205ENST00000465238 KIZQ2M2Z5 673 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 XKR3Q5GH77 459 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 ERMNQ8TAM6 284 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 DYDC2Q96IM9 177 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 ADAM2Q99965 735 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 EIF2AK1Q9BQI3 630 aaKnown RBP19.78■□□□□ 0.76
COL7A1-205ENST00000465238 PRKAG3Q9UGI9 489 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 FNDC1Q4ZHG4 1894 aaPredicted RBP19.77■□□□□ 0.76
COL7A1-205ENST00000465238 DDX11L8A8MPP1 907 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 F13A1P00488 732 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 GATMP50440 423 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 CTTNQ14247 550 aaKnown RBP19.77■□□□□ 0.76
COL7A1-205ENST00000465238 PDIA5Q14554 519 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 ARL6IP4Q66PJ3 421 aaKnown RBP19.77■□□□□ 0.76
COL7A1-205ENST00000465238 TPH2Q8IWU9 490 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 ZNF710Q8N1W2 664 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 KLHL23Q8NBE8 558 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 SPPL3Q8TCT6 385 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 ZNF396Q96N95 335 aaPredicted RBP19.77■□□□□ 0.76
COL7A1-205ENST00000465238 OSMRQ99650 979 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 LXNQ9BS40 222 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 ZSWIM4Q9H7M6 989 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 RGL1Q9NZL6 768 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 LRWD1Q9UFC0 647 aa19.77■□□□□ 0.76
COL7A1-205ENST00000465238 C9IYK1 514 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 GPR32O75388 356 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 SLITRK3O94933 977 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 VTNP04004 478 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 IBSPP21815 317 aaPredicted RBP19.76■□□□□ 0.75
COL7A1-205ENST00000465238 TMOD1P28289 359 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 CYP4A11Q02928 519 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 PKP1Q13835 747 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 FAM228AQ86W67 206 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 MAP7D2Q96T17 732 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 HSD17B14Q9BPX1 270 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 SEPT9Q9UHD8 586 aaPredicted RBP19.76■□□□□ 0.75
COL7A1-205ENST00000465238 STK24Q9Y6E0 443 aa19.76■□□□□ 0.75
COL7A1-205ENST00000465238 MYH15Q9Y2K3 1946 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 CSPG5O95196 566 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 ALADP13716 330 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 DNAJB1P25685 340 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 CEBPZQ03701 1054 aaKnown RBP19.75■□□□□ 0.75
COL7A1-205ENST00000465238 EFCAB12Q6NXP0 572 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 C4orf19Q8IY42 314 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 POF1BQ8WVV4 589 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 PPP1R16BQ96T49 567 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 IGFLR1Q9H665 355 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 ELAC1Q9H777 363 aaKnown RBP19.75■□□□□ 0.75
COL7A1-205ENST00000465238 C11orf16Q9NQ32 467 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 AAASQ9NRG9 546 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 TMEM161AQ9NX61 479 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 PCDHB12Q9Y5F1 795 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 CLIC4Q9Y696 253 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 C5orf42Q9H799 3197 aa19.75■□□□□ 0.75
COL7A1-205ENST00000465238 PLXNA4Q9HCM2 1894 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 VWA3AA6NCI4 1184 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 TBKBP1A7MCY6 615 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 CLCN3P51790 818 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 NLRP11P59045 1033 aaKnown RBP19.74■□□□□ 0.75
COL7A1-205ENST00000465238 FAM189BP81408 668 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 UBE3AQ05086 875 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 ZP2Q05996 745 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 DLX2Q07687 328 aaPredicted RBP19.74■□□□□ 0.75
COL7A1-205ENST00000465238 ADAM15Q13444 863 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 IL17AQ16552 155 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 HAUS3Q68CZ6 603 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 OTUD6AQ7L8S5 288 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 ADHFE1Q8IWW8 467 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 LINC01465Q8N7H1 131 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 IGSF22Q8N9C0 903 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 POLR3CQ9BUI4 534 aaPredicted RBP19.74■□□□□ 0.75
COL7A1-205ENST00000465238 NIFKQ9BYG3 293 aaKnown RBP19.74■□□□□ 0.75
COL7A1-205ENST00000465238 ATP6V0A4Q9HBG4 840 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 TUFT1Q9NNX1 390 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 AKT3Q9Y243 479 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 HCN4Q9Y3Q4 1203 aa19.74■□□□□ 0.75
COL7A1-205ENST00000465238 ARIH1Q9Y4X5 557 aaPredicted RBP19.74■□□□□ 0.75
COL7A1-205ENST00000465238 TBX10O75333 385 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 STBD1O95210 358 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 GTF2F1P35269 517 aaKnown RBP eCLIP19.73■□□□□ 0.75
COL7A1-205ENST00000465238 DSC3Q14574 896 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 SMAD2Q15796 467 aaKnown RBP19.73■□□□□ 0.75
COL7A1-205ENST00000465238 CSPP1Q1MSJ5 1256 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 MTERF2Q49AM1 385 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 SPOUT1Q5T280 376 aaKnown RBP19.73■□□□□ 0.75
COL7A1-205ENST00000465238 FAM102BQ5T8I3 360 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 CATSPER3Q86XQ3 398 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 USP28Q96RU2 1077 aa19.73■□□□□ 0.75
COL7A1-205ENST00000465238 WRAP73Q9P2S5 460 aaPredicted RBP19.73■□□□□ 0.75
COL7A1-205ENST00000465238 C19orf67A6NJJ6 358 aa19.72■□□□□ 0.75
COL7A1-205ENST00000465238 LINC01565O15544 149 aa19.72■□□□□ 0.75
COL7A1-205ENST00000465238 MBTPS2O43462 519 aa19.72■□□□□ 0.75
COL7A1-205ENST00000465238 LYPLA2O95372 231 aa19.72■□□□□ 0.75
COL7A1-205ENST00000465238 BRD1O95696 1058 aa19.72■□□□□ 0.75
COL7A1-205ENST00000465238 EIF4BP23588 611 aaKnown RBP19.72■□□□□ 0.75
COL7A1-205ENST00000465238 RPA1P27694 616 aa19.72■□□□□ 0.75
COL7A1-205ENST00000465238 YWHABP31946 246 aaKnown RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms