RNA–Protein interactions for RNA: ENST00000465074.1

XRN1-204, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 643 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-204ENST00000465074 TCP11Q8WWU5 503 aa13.59□□□□□ -0.23
XRN1-204ENST00000465074 C11orf84Q9BUA3 381 aaPredicted RBP13.59□□□□□ -0.23
XRN1-204ENST00000465074 INO80BQ9C086 356 aaPredicted RBP13.59□□□□□ -0.23
XRN1-204ENST00000465074 DHX33Q9H6R0 707 aaKnown RBP13.59□□□□□ -0.23
XRN1-204ENST00000465074 ALG13Q9NP73 1137 aaKnown RBP13.59□□□□□ -0.23
XRN1-204ENST00000465074 ANKEF1Q9NU02 776 aa13.59□□□□□ -0.23
XRN1-204ENST00000465074 RWDD3Q9Y3V2 267 aa13.59□□□□□ -0.23
XRN1-204ENST00000465074 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.59□□□□□ -0.23
XRN1-204ENST00000465074 GRM6O15303 877 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 USO1O60763 962 aaKnown RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 MED24O75448 989 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 CCT6AP40227 531 aaKnown RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 TRAPPC10P48553 1259 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 TOB1P50616 345 aaPredicted RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 MRPS5P82675 430 aaKnown RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 POTEGQ6S5H5 508 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 CATSPER3Q86XQ3 398 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 ECHDC2Q86YB7 292 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 CRIPAKQ8N1N5 446 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 RNF149Q8NC42 400 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 MRPL38Q96DV4 380 aaKnown RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 COL25A1Q9BXS0 654 aaPredicted RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 RC3H2Q9HBD1 1191 aaKnown RBP13.58□□□□□ -0.24
XRN1-204ENST00000465074 FOXD4L1Q9NU39 408 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 TMEM161AQ9NX61 479 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 DACT1Q9NYF0 836 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 LMCD1Q9NZU5 365 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 HCSTQ9UBK5 93 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 LRWD1Q9UFC0 647 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 PPME1Q9Y570 386 aa13.58□□□□□ -0.24
XRN1-204ENST00000465074 COL4A6Q14031 1691 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 RB1P06400 928 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 SPATA31C1P0DKV0 1188 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 PHKA2P46019 1235 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 FAM189BP81408 668 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 ORC2Q13416 577 aaPredicted RBP13.57□□□□□ -0.24
XRN1-204ENST00000465074 ZRSR1Q15695 479 aaKnown RBP13.57□□□□□ -0.24
XRN1-204ENST00000465074 FERMT3Q86UX7 667 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 ATXN2LQ8WWM7 1075 aaKnown RBP13.57□□□□□ -0.24
XRN1-204ENST00000465074 CLP1Q92989 425 aaKnown RBP13.57□□□□□ -0.24
XRN1-204ENST00000465074 LPPQ93052 612 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 HLA-CQ95604 372 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 ASB2Q96Q27 587 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 NACC1Q96RE7 527 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 IFT122Q9HBG6 1241 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 TUFT1Q9NNX1 390 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 TYW1Q9NV66 732 aaKnown RBP13.57□□□□□ -0.24
XRN1-204ENST00000465074 PCDHB12Q9Y5F1 795 aa13.57□□□□□ -0.24
XRN1-204ENST00000465074 TCF20Q9UGU0 1960 aaKnown RBP13.56□□□□□ -0.24
XRN1-204ENST00000465074 VPS37CA5D8V6 355 aaPredicted RBP13.56□□□□□ -0.24
XRN1-204ENST00000465074 ARHGEF35A5YM69 484 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 INO80B-WBP1J3KQ70 363 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 ASAP2O43150 1006 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 GAS2O43903 313 aaKnown RBP13.56□□□□□ -0.24
XRN1-204ENST00000465074 DGAT1O75907 488 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 ERLIN2O94905 339 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 LYPLA2O95372 231 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 RARRES1P49788 294 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 KCNQ1P51787 676 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 TFDP1Q14186 410 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 MXD4Q14582 209 aaPredicted RBP13.56□□□□□ -0.24
XRN1-204ENST00000465074 TJAP1Q5JTD0 557 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 C4orf32Q8N8J7 132 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 KLHL23Q8NBE8 558 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 HELQQ8TDG4 1101 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 RAB34Q9BZG1 259 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 POLR3FQ9H1D9 316 aaPredicted RBP13.56□□□□□ -0.24
XRN1-204ENST00000465074 IGFLR1Q9H665 355 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 ELAC1Q9H777 363 aaKnown RBP13.56□□□□□ -0.24
XRN1-204ENST00000465074 MINDY3Q9H8M7 445 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 POLD4Q9HCU8 107 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 XPNPEP1Q9NQW7 623 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 AAASQ9NRG9 546 aa13.56□□□□□ -0.24
XRN1-204ENST00000465074 PLXNA4Q9HCM2 1894 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 A0A0U1RQF3 1178 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 LRRIQ4A6NIV6 560 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 PP2D1A8MPX8 630 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 HOXA2O43364 376 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 LINC00271P0C7V0 271 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 XRCC6P12956 609 aaKnown RBP eCLIP13.55□□□□□ -0.24
XRN1-204ENST00000465074 LIG1P18858 919 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 RPA1P27694 616 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 AAK1Q2M2I8 961 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 TCEAL5Q5H9L2 206 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 HAUS3Q68CZ6 603 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 DTHD1Q6ZMT9 781 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 FAM43BQ6ZT52 329 aaPredicted RBP13.55□□□□□ -0.24
XRN1-204ENST00000465074 SRGAP1Q7Z6B7 1085 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 THNSL1Q8IYQ7 743 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 ASAP3Q8TDY4 903 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 MICAL1Q8TDZ2 1067 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 SNX29Q8TEQ0 813 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 SYMPKQ92797 1274 aaKnown RBP13.55□□□□□ -0.24
XRN1-204ENST00000465074 CASD1Q96PB1 797 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 POLR3CQ9BUI4 534 aaPredicted RBP13.55□□□□□ -0.24
XRN1-204ENST00000465074 PLVAPQ9BX97 442 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 TMEM117Q9H0C3 514 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 GPRC5CQ9NQ84 441 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 CHST12Q9NRB3 414 aa13.55□□□□□ -0.24
XRN1-204ENST00000465074 PLAGL2Q9UPG8 496 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms