RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 JAKMIP3Q5VZ66 844 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 CWF19L1Q69YN2 538 aaKnown RBP16.37■□□□□ 0.21
SMC1A-204ENST00000463684 CCDC149Q6ZUS6 474 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 DTWD2Q8NBA8 298 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 SLC22A17Q8WUG5 538 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 NLRP7Q8WX94 980 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 SFXN1Q9H9B4 322 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 CHST12Q9NRB3 414 aa16.37■□□□□ 0.21
SMC1A-204ENST00000463684 VPS13AQ96RL7 3174 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 SLC27A2O14975 620 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 NPR3P17342 541 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 FGFR4P22455 802 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 CDC42EP1Q00587 391 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 GPR149Q86SP6 731 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 SIX5Q8N196 739 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 LINC01465Q8N7H1 131 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 IGSF21Q96ID5 467 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 EMILIN2Q9BXX0 1053 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 SEMA4AQ9H3S1 761 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 DUSP12Q9UNI6 340 aa16.36■□□□□ 0.21
SMC1A-204ENST00000463684 DMDP11532 3685 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 SKIP12755 728 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 KLRC2P26717 231 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 RNASELQ05823 741 aaKnown RBP16.35■□□□□ 0.21
SMC1A-204ENST00000463684 COL9A3Q14050 684 aaPredicted RBP16.35■□□□□ 0.21
SMC1A-204ENST00000463684 RTN1Q16799 776 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 APOA5Q6Q788 366 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 GLB1LQ6UWU2 654 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 GCOM2Q9BZD3 368 aaPredicted RBP16.35■□□□□ 0.21
SMC1A-204ENST00000463684 KCNK12Q9HB15 430 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 STK39Q9UEW8 545 aa16.35■□□□□ 0.21
SMC1A-204ENST00000463684 WDR64B1ANS9 1081 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 ZBTB43O43298 467 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 OATP04181 439 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 GALTP07902 379 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 RFX1P22670 979 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 PHKA2P46019 1235 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 TBC1D8BQ0IIM8 1120 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 FUT2Q10981 343 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 PRR16Q569H4 304 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 NOMO2Q5JPE7 1267 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 CREB3L3Q68CJ9 461 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 TMEM173Q86WV6 379 aaPredicted RBP16.34■□□□□ 0.21
SMC1A-204ENST00000463684 CRYGNQ8WXF5 182 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 NRDE2Q9H7Z3 1164 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 IGSF9Q9P2J2 1179 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 SPTBN4Q9H254 2564 aa16.34■□□□□ 0.21
SMC1A-204ENST00000463684 CSDE1O75534 798 aaKnown RBP16.33■□□□□ 0.2
SMC1A-204ENST00000463684 LMNAP02545 664 aaKnown RBP16.33■□□□□ 0.2
SMC1A-204ENST00000463684 DNM2P50570 870 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 NONOQ15233 471 aaKnown RBP eCLIP16.33■□□□□ 0.2
SMC1A-204ENST00000463684 LETM2Q2VYF4 491 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 LONRF3Q496Y0 759 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 TWF2Q6IBS0 349 aaKnown RBP16.33■□□□□ 0.2
SMC1A-204ENST00000463684 TRAIPQ9BWF2 469 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 INO80BQ9C086 356 aaPredicted RBP16.33■□□□□ 0.2
SMC1A-204ENST00000463684 LSG1Q9H089 658 aaKnown RBP16.33■□□□□ 0.2
SMC1A-204ENST00000463684 GBP3Q9H0R5 595 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 C6orf50Q9HD87 102 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 DISC1Q9NRI5 854 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 TBC1D13Q9NVG8 400 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 INPP5FQ9Y2H2 1132 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 EVPLQ92817 2033 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 MYO10Q9HD67 2058 aa16.33■□□□□ 0.2
SMC1A-204ENST00000463684 SFPQP23246 707 aaKnown RBP eCLIP16.32■□□□□ 0.2
SMC1A-204ENST00000463684 CLCN4P51793 760 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 PRKCEQ02156 737 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 NECTIN1Q15223 517 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 PTPN14Q15678 1187 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 C15orf39Q6ZRI6 1047 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 CCDC12Q8WUD4 166 aaPredicted RBP16.32■□□□□ 0.2
SMC1A-204ENST00000463684 LPPQ93052 612 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 KLHL5Q96PQ7 755 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 WNT16Q9UBV4 365 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 DCHS1Q96JQ0 3298 aa16.32■□□□□ 0.2
SMC1A-204ENST00000463684 GOLGA8AA7E2F4 631 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 GOLGA8BA8MQT2 603 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 ZNF862O60290 1169 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 SSBP05455 408 aaKnown RBP eCLIP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 CFHP08603 1231 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 PFKFB3Q16875 520 aaPredicted RBP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 RNF20Q5VTR2 975 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 ELMSAN1Q6PJG2 1045 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 DGLUCYQ7Z3D6 616 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 REXO1Q8N1G1 1221 aaKnown RBP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 BCL7CQ8WUZ0 217 aaPredicted RBP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 PGBD4Q96DM1 585 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 MRPL17Q9NRX2 175 aaKnown RBP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 FAM105AQ9NUU6 356 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 DNAJB4Q9UDY4 337 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 DPP7Q9UHL4 492 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 BRPF3Q9ULD4 1205 aa16.31■□□□□ 0.2
SMC1A-204ENST00000463684 PIN4Q9Y237 131 aaKnown RBP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 RIF1Q5UIP0 2472 aaKnown RBP16.31■□□□□ 0.2
SMC1A-204ENST00000463684 A0A087WZ62 844 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 NARSO43776 548 aaKnown RBP16.3■□□□□ 0.2
SMC1A-204ENST00000463684 OFD1O75665 1012 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 ALDH2P05091 517 aa16.3■□□□□ 0.2
SMC1A-204ENST00000463684 CNPP09543 421 aaKnown RBP16.3■□□□□ 0.2
SMC1A-204ENST00000463684 GNA11P29992 359 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms