RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 NGRNQ9NPE2 291 aaKnown RBP18.11■□□□□ 0.49
COL7A1-204ENST00000462475 SPG21Q9NZD8 308 aa18.11■□□□□ 0.49
COL7A1-204ENST00000462475 CYP46A1Q9Y6A2 500 aa18.11■□□□□ 0.49
COL7A1-204ENST00000462475 ZNF318Q5VUA4 2279 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 A0A087WZ62 844 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 IGKV6-21A0A0C4DH24 114 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 SLC37A4O43826 429 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 INF2Q27J81 1249 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 SYCE2Q6PIF2 218 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 MOXD1Q6UVY6 613 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 TMC7Q7Z402 723 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 ALYREFQ86V81 257 aaKnown RBP18.1■□□□□ 0.49
COL7A1-204ENST00000462475 ZNF274Q96GC6 653 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-204ENST00000462475 MFSD14AQ96MC6 490 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 FDXACB1Q9BRP7 624 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-204ENST00000462475 DACT1Q9NYF0 836 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 DDX25Q9UHL0 483 aaKnown RBP18.1■□□□□ 0.49
COL7A1-204ENST00000462475 KCNJ14Q9UNX9 436 aa18.1■□□□□ 0.49
COL7A1-204ENST00000462475 EPB41L2O43491 1005 aaKnown RBP18.09■□□□□ 0.49
COL7A1-204ENST00000462475 EOMESO95936 686 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 SRGAP2BP0DMP2 458 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 ZXDAP98168 799 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 NHLH1Q02575 133 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 KRT17Q04695 432 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 NONOQ15233 471 aaKnown RBP eCLIP18.09■□□□□ 0.49
COL7A1-204ENST00000462475 PLA2G4FQ68DD2 849 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 TRIM67Q6ZTA4 783 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 ANO5Q75V66 913 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 MRPL9Q9BYD2 267 aaKnown RBP18.09■□□□□ 0.49
COL7A1-204ENST00000462475 TM6SF1Q9BZW5 370 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 CDH22Q9UJ99 828 aa18.09■□□□□ 0.49
COL7A1-204ENST00000462475 TMEM221A6NGB7 291 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 DDX11L8A8MPP1 907 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 NT5C1B-RDH14C9J2C7 533 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 M0R296 226 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 EML1O00423 815 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 MAFO75444 373 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-204ENST00000462475 SFPQP23246 707 aaKnown RBP eCLIP18.08■□□□□ 0.48
COL7A1-204ENST00000462475 PHKA2P46019 1235 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 LONRF3Q496Y0 759 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 GALNT17Q6IS24 598 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 KRT25Q7Z3Z0 450 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 TMEM173Q86WV6 379 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-204ENST00000462475 RHPN2Q8IUC4 686 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 KSR1Q8IVT5 923 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 LPPQ93052 612 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 KCNH6Q9H252 994 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 CHST12Q9NRB3 414 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 SUCLA2Q9P2R7 463 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-204ENST00000462475 VAV3Q9UKW4 847 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 PIN4Q9Y237 131 aaKnown RBP18.08■□□□□ 0.48
COL7A1-204ENST00000462475 HCFC2Q9Y5Z7 792 aa18.08■□□□□ 0.48
COL7A1-204ENST00000462475 C2orf71A6NGG8 1288 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 MEIS3P2A8K0S8 358 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 DTNBO60941 627 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 SP100P23497 879 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-204ENST00000462475 DNM2P50570 870 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 BCAR1P56945 870 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 PSMC5P62195 406 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 CDC42EP1Q00587 391 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 SMC1AQ14683 1233 aaKnown RBP18.07■□□□□ 0.48
COL7A1-204ENST00000462475 LETM2Q2VYF4 491 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 TWF2Q6IBS0 349 aaKnown RBP18.07■□□□□ 0.48
COL7A1-204ENST00000462475 CPLX2Q6PUV4 134 aaKnown RBP18.07■□□□□ 0.48
COL7A1-204ENST00000462475 BMP8AQ7Z5Y6 402 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 ZNF410Q86VK4 478 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 FAM177A1Q8N128 213 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-204ENST00000462475 MRPL43Q8N983 215 aaKnown RBP18.07■□□□□ 0.48
COL7A1-204ENST00000462475 NLRP4Q96MN2 994 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 TRAIPQ9BWF2 469 aa18.07■□□□□ 0.48
COL7A1-204ENST00000462475 ZC3H11AO75152 810 aaKnown RBP eCLIP18.06■□□□□ 0.48
COL7A1-204ENST00000462475 NPEPPSP55786 919 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 SCRN1Q12765 414 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 CASP10Q92851 521 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 PBXIP1Q96AQ6 731 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 PHF20Q9BVI0 1012 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 KCNMB3Q9NPA1 279 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 CYP26B1Q9NR63 512 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 GJB4Q9NTQ9 266 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 PDRG1Q9NUG6 133 aa18.06■□□□□ 0.48
COL7A1-204ENST00000462475 WRAP73Q9P2S5 460 aaPredicted RBP18.06■□□□□ 0.48
COL7A1-204ENST00000462475 CLASP2O75122 1294 aaKnown RBP18.05■□□□□ 0.48
COL7A1-204ENST00000462475 HOXB8P17481 243 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-204ENST00000462475 CA8P35219 290 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 ALDH7A1P49419 539 aaKnown RBP18.05■□□□□ 0.48
COL7A1-204ENST00000462475 PPP2R5CQ13362 524 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 CATSPER4Q7RTX7 472 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 ZNF579Q8NAF0 562 aaKnown RBP18.05■□□□□ 0.48
COL7A1-204ENST00000462475 BCL7CQ8WUZ0 217 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-204ENST00000462475 AUTS2Q8WXX7 1259 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 TMEM169Q96HH4 297 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 ZBP1Q9H171 429 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 FAM105AQ9NUU6 356 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 TBC1D13Q9NVG8 400 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 INPP5FQ9Y2H2 1132 aa18.05■□□□□ 0.48
COL7A1-204ENST00000462475 CCDC194A0A1B0GVG4 234 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 QARSP47897 775 aaKnown RBP18.04■□□□□ 0.48
COL7A1-204ENST00000462475 MRE11P49959 708 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 SIGLEC14Q08ET2 396 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 PTPN21Q16825 1174 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms