RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 ANKEF1Q9NU02 776 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 PLXNA4Q9HCM2 1894 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 RB1P06400 928 aa20.67■□□□□ 0.9
HOXD3-204ENST00000459979 DARSP14868 501 aaKnown RBP20.67■□□□□ 0.9
HOXD3-204ENST00000459979 ZP2Q05996 745 aa20.67■□□□□ 0.9
HOXD3-204ENST00000459979 ZNF579Q8NAF0 562 aaKnown RBP20.67■□□□□ 0.9
HOXD3-204ENST00000459979 SLC7A3Q8WY07 619 aa20.67■□□□□ 0.9
HOXD3-204ENST00000459979 CLP1Q92989 425 aaKnown RBP20.67■□□□□ 0.9
HOXD3-204ENST00000459979 IGFLR1Q9H665 355 aa20.67■□□□□ 0.9
HOXD3-204ENST00000459979 ALG13Q9NP73 1137 aaKnown RBP20.67■□□□□ 0.9
HOXD3-204ENST00000459979 RGS18Q9NS28 235 aa20.67■□□□□ 0.9
HOXD3-204ENST00000459979 MRPL42Q9Y6G3 142 aaKnown RBP20.67■□□□□ 0.9
HOXD3-204ENST00000459979 ARID2Q68CP9 1835 aa20.67■□□□□ 0.9
HOXD3-204ENST00000459979 POTEMA6NI47 508 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 LAD1O00515 517 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 GAS2O43903 313 aaKnown RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 DGKIO75912 1065 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 SPATA31C1P0DKV0 1188 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 IBSPP21815 317 aaPredicted RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 PAN2Q504Q3 1202 aaKnown RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 RILPL1Q5EBL4 403 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 ZNF410Q86VK4 478 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 NPAS4Q8IUM7 802 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 PPP1R16BQ96T49 567 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 POLR3CQ9BUI4 534 aaPredicted RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 LMAN2LQ9H0V9 348 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 TUFT1Q9NNX1 390 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 C1orf112Q9NSG2 853 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 RNF216Q9NWF9 866 aaPredicted RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 SUCLA2Q9P2R7 463 aaPredicted RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 RWDD3Q9Y3V2 267 aa20.66■□□□□ 0.9
HOXD3-204ENST00000459979 ARIH1Q9Y4X5 557 aaPredicted RBP20.66■□□□□ 0.9
HOXD3-204ENST00000459979 PRR33A8MZF0 331 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 H3BQV1 296 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 ZBTB39O15060 712 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 LINC01565O15544 149 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 MGEA5O60502 916 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 TECP42680 631 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 GATMP50440 423 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 FXR2P51116 673 aaKnown RBP eCLIP20.65■□□□□ 0.9
HOXD3-204ENST00000459979 FAM189BP81408 668 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 PDIA5Q14554 519 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 DSC3Q14574 896 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 CTC1Q2NKJ3 1217 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 XKR9Q5GH70 373 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 LARP1BQ659C4 914 aaKnown RBP20.65■□□□□ 0.9
HOXD3-204ENST00000459979 SLC24A5Q71RS6 500 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.65■□□□□ 0.9
HOXD3-204ENST00000459979 PCDHB6Q9Y5E3 794 aa20.65■□□□□ 0.9
HOXD3-204ENST00000459979 C9IYK1 514 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 DCXO43602 365 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 TBX10O75333 385 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 STAG3L1P0CL83 205 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 ALADP13716 330 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 MUTP22033 750 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 DNAJB1P25685 340 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 RPA1P27694 616 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 SARSP49591 514 aaKnown RBP20.64■□□□□ 0.89
HOXD3-204ENST00000459979 POLGP54098 1239 aaPredicted RBP20.64■□□□□ 0.89
HOXD3-204ENST00000459979 PTGDRQ13258 359 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 CAMK1Q14012 370 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 NBR1Q14596 966 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 MCTP1Q6DN14 999 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 CATSPER3Q86XQ3 398 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 NLRP7Q8WX94 980 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 INTS4Q96HW7 963 aaKnown RBP20.64■□□□□ 0.89
HOXD3-204ENST00000459979 ADAM2Q99965 735 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 GCOM2Q9BZD3 368 aaPredicted RBP20.64■□□□□ 0.89
HOXD3-204ENST00000459979 FAM50BQ9Y247 325 aa20.64■□□□□ 0.89
HOXD3-204ENST00000459979 FNDC1Q4ZHG4 1894 aaPredicted RBP20.64■□□□□ 0.89
HOXD3-204ENST00000459979 ASAP2O43150 1006 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 PRPHP41219 470 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 RARRES1P49788 294 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 EMC2Q15006 297 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 CSPP1Q1MSJ5 1256 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 RHPN2Q8IUC4 686 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 ADHFE1Q8IWW8 467 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 ERMNQ8TAM6 284 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 TCP11Q8WWU5 503 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 INO80BQ9C086 356 aaPredicted RBP20.63■□□□□ 0.89
HOXD3-204ENST00000459979 PLAGL2Q9UPG8 496 aa20.63■□□□□ 0.89
HOXD3-204ENST00000459979 C5orf42Q9H799 3197 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 MUC6Q6W4X9 2439 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 A0A087WZ62 844 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 DENND3A2RUS2 1198 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 C19orf67A6NJJ6 358 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 MBTPS2O43462 519 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 MED24O75448 989 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 DGAT1O75907 488 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 ITGB1P05556 798 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 IRS1P35568 1242 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 ADGRD2Q7Z7M1 963 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 IGSF22Q8N9C0 903 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 PRPF31Q8WWY3 499 aaKnown RBP20.62■□□□□ 0.89
HOXD3-204ENST00000459979 PSPC1Q8WXF1 523 aaKnown RBP20.62■□□□□ 0.89
HOXD3-204ENST00000459979 SCLT1Q96NL6 688 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 NACC1Q96RE7 527 aa20.62■□□□□ 0.89
HOXD3-204ENST00000459979 FDXACB1Q9BRP7 624 aaPredicted RBP20.62■□□□□ 0.89
HOXD3-204ENST00000459979 ELAC1Q9H777 363 aaKnown RBP20.62■□□□□ 0.89
HOXD3-204ENST00000459979 XPNPEP1Q9NQW7 623 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms