RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TRAIPQ9BWF2 469 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 AGXT2Q9BYV1 514 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 ADAM7Q9H2U9 754 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 UNC45AQ9H3U1 944 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 HCSTQ9UBK5 93 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 STK39Q9UEW8 545 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 SEPT9Q9UHD8 586 aaPredicted RBP14.95□□□□□ -0.02
HMGB3-204ENST00000448905 PCDHA4Q9UN74 947 aa14.95□□□□□ -0.02
HMGB3-204ENST00000448905 MUC6Q6W4X9 2439 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 LOXHD1Q8IVV2 1947 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 CYP3A7-CYP3A51PA0A087WV96 503 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 C2orf71A6NGG8 1288 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 ADAMTS3O15072 1205 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 CYP3A7P24462 503 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 MTHFRP42898 656 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 BCAR1P56945 870 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 EVCP57679 992 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 RNASELQ05823 741 aaKnown RBP14.94□□□□□ -0.02
HMGB3-204ENST00000448905 TARBP2Q15633 366 aaKnown RBP14.94□□□□□ -0.02
HMGB3-204ENST00000448905 MTERF2Q49AM1 385 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 ATAT1Q5SQI0 421 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 TWF2Q6IBS0 349 aaKnown RBP14.94□□□□□ -0.02
HMGB3-204ENST00000448905 SYCE2Q6PIF2 218 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 GLB1LQ6UWU2 654 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 ZNF410Q86VK4 478 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 SLC39A11Q8N1S5 342 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 PGBD4Q96DM1 585 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 APOL5Q9BWW9 433 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 TSHZ2Q9NRE2 1034 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 SUCLA2Q9P2R7 463 aaPredicted RBP14.94□□□□□ -0.02
HMGB3-204ENST00000448905 WDFY4Q6ZS81 3184 aa14.94□□□□□ -0.02
HMGB3-204ENST00000448905 MARCH6O60337 910 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 PSMD10O75832 226 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 DEXIO95424 95 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 FGFR4P22455 802 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 PBX3P40426 434 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 PHKA2P46019 1235 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 NUBP1P53384 320 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 POLGP54098 1239 aaPredicted RBP14.93□□□□□ -0.02
HMGB3-204ENST00000448905 CLLU1OSQ5K130 101 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 RUFY3Q7L099 469 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 ZNF598Q86UK7 904 aaKnown RBP14.93□□□□□ -0.02
HMGB3-204ENST00000448905 RHPN2Q8IUC4 686 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 UBALD2Q8IYN6 164 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 BLIDQ8IZY5 108 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 PHOX2BQ99453 314 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 SLKQ9H2G2 1235 aaPredicted RBP14.93□□□□□ -0.02
HMGB3-204ENST00000448905 RNF19AQ9NV58 838 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 CYP46A1Q9Y6A2 500 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 KIAA1671Q9BY89 1806 aa14.93□□□□□ -0.02
HMGB3-204ENST00000448905 TTC3P53804 2025 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 A0A087WZ62 844 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 EPB41L2O43491 1005 aaKnown RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 CLASP2O75122 1294 aaKnown RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 MAFO75444 373 aaPredicted RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 CSDE1O75534 798 aaKnown RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 XBP1P17861 261 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 AVPR2P30518 371 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 RAB27AP51159 221 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 PSMC5P62195 406 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 UGCGQ16739 394 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 IER5LQ5T953 404 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 MOXD1Q6UVY6 613 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 CATSPER4Q7RTX7 472 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 PPFIBP1Q86W92 1011 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 SKAP1Q86WV1 359 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 VPS52Q8N1B4 723 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 PLCD3Q8N3E9 789 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 SLC7A3Q8WY07 619 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 ZNF274Q96GC6 653 aaPredicted RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 FDXACB1Q9BRP7 624 aaPredicted RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 NCOA5Q9HCD5 579 aaKnown RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 DZANK1Q9NVP4 752 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 KANSL3Q9P2N6 904 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 PIN4Q9Y237 131 aaKnown RBP14.92□□□□□ -0.02
HMGB3-204ENST00000448905 HCFC2Q9Y5Z7 792 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 NID2Q14112 1375 aa14.92□□□□□ -0.02
HMGB3-204ENST00000448905 IGKV6-21A0A0C4DH24 114 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 NT5C1B-RDH14C9J2C7 533 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 ZNF623O75123 536 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 ZC3H11AO75152 810 aaKnown RBP eCLIP14.91□□□□□ -0.02
HMGB3-204ENST00000448905 ALDH2P05091 517 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 NCBP1Q09161 790 aaKnown RBP14.91□□□□□ -0.02
HMGB3-204ENST00000448905 MTMR3Q13615 1198 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 NONOQ15233 471 aaKnown RBP eCLIP14.91□□□□□ -0.02
HMGB3-204ENST00000448905 NOMO2Q5JPE7 1267 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 KRT25Q7Z3Z0 450 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 DDX53Q86TM3 631 aaKnown RBP14.91□□□□□ -0.02
HMGB3-204ENST00000448905 KREMEN2Q8NCW0 462 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 URGCPQ8TCY9 931 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 ASIC4Q96FT7 647 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 FAM20AQ96MK3 541 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 NAP1L4Q99733 375 aaKnown RBP14.91□□□□□ -0.02
HMGB3-204ENST00000448905 ZSWIM6Q9HCJ5 1215 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 DDX25Q9UHL0 483 aaKnown RBP14.91□□□□□ -0.02
HMGB3-204ENST00000448905 SORCS3Q9UPU3 1222 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 PPME1Q9Y570 386 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 IRAK3Q9Y616 596 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 TRIOO75962 3097 aa14.91□□□□□ -0.02
HMGB3-204ENST00000448905 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms