RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TMEM62Q0P6H9 643 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 DMP1Q13316 513 aaPredicted RBP17.44■□□□□ 0.38
USP40-206ENST00000443711 ODR4Q5SWX8 454 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 ZNF410Q86VK4 478 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 KSR1Q8IVT5 923 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 SPIRE2Q8WWL2 714 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 BSNDQ8WZ55 320 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 SMARCE1Q969G3 411 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 SCLT1Q96NL6 688 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 GSDMAQ96QA5 445 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 CELF4Q9BZC1 486 aaKnown RBP17.44■□□□□ 0.38
USP40-206ENST00000443711 PCDHA5Q9Y5H7 936 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 ALPK3Q96L96 1907 aa17.44■□□□□ 0.38
USP40-206ENST00000443711 LRRIQ4A6NIV6 560 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 CCDC169A6NNP5 214 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 PITPNM1O00562 1244 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 CKBP12277 381 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 COASYQ13057 564 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 CAPSQ13938 189 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 KIZQ2M2Z5 673 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 KMT5BQ4FZB7 885 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 FAM26DQ5JW98 314 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 CCDC183Q5T5S1 534 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 SFR1Q86XK3 245 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 RNF149Q8NC42 400 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 SPATA20Q8TB22 786 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 DEPTORQ8TB45 409 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 NLRP7Q8WX94 980 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 NLRP4Q96MN2 994 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 NTPCRQ9BSD7 190 aaKnown RBP17.43■□□□□ 0.38
USP40-206ENST00000443711 NOC4LQ9BVI4 516 aaKnown RBP17.43■□□□□ 0.38
USP40-206ENST00000443711 ADAMTS10Q9H324 1103 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 KMT5AQ9NQR1 393 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 EXOC1Q9NV70 894 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 RMND1Q9NWS8 449 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 TBX21Q9UL17 535 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 TRPV2Q9Y5S1 764 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 CDY2AQ9Y6F7 541 aa17.43■□□□□ 0.38
USP40-206ENST00000443711 A0A087WZ62 844 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 H0YCG3 227 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 GPR32O75388 356 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 CTSHP09668 335 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 MAPTP10636 758 aaKnown RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 SELPP16109 830 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 PHKA2P46019 1235 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 NPTX2P47972 431 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 CRYBB1P53674 252 aaPredicted RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 PSMD2Q13200 908 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 KCNB1Q14721 858 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 ZNF618Q5T7W0 954 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 CAVIN1Q6NZI2 390 aaKnown RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 FAM178BQ8IXR5 827 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 SLC17A8Q8NDX2 589 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 ERCC4Q92889 916 aaPredicted RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 ZNF668Q96K58 619 aaPredicted RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 PPP1R16BQ96T49 567 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 FDXACB1Q9BRP7 624 aaPredicted RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 GCOM2Q9BZD3 368 aaPredicted RBP17.42■□□□□ 0.38
USP40-206ENST00000443711 HIPK3Q9H422 1215 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 OLFML3Q9NRN5 406 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 KIAA1468Q9P260 1216 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 GINS2Q9Y248 185 aa17.42■□□□□ 0.38
USP40-206ENST00000443711 KIAA0355O15063 1070 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 RHOBTB3O94955 611 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 CHRNA1P02708 482 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 SCP2P22307 547 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 SARSP49591 514 aaKnown RBP17.41■□□□□ 0.38
USP40-206ENST00000443711 EFNA5P52803 228 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 PTENP60484 403 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 EHHADHQ08426 723 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 MGAT3Q09327 533 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 FAM26FQ5R3K3 315 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 NT5DC1Q5TFE4 455 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 SRGAP1Q7Z6B7 1085 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 IFNLR1Q8IU57 520 aaPredicted RBP17.41■□□□□ 0.38
USP40-206ENST00000443711 ZBTB8OSQ8IWT0 167 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 NFKBIZQ9BYH8 718 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 GTPBP4Q9BZE4 634 aaKnown RBP17.41■□□□□ 0.38
USP40-206ENST00000443711 INO80BQ9C086 356 aaPredicted RBP17.41■□□□□ 0.38
USP40-206ENST00000443711 C2orf40Q9H1Z8 148 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 MRPL44Q9H9J2 332 aaKnown RBP17.41■□□□□ 0.38
USP40-206ENST00000443711 CDHR5Q9HBB8 845 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 TMEM63CQ9P1W3 806 aa17.41■□□□□ 0.38
USP40-206ENST00000443711 SLC16A4O15374 487 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 EVI5O60447 810 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 NMT1P30419 496 aaKnown RBP17.4■□□□□ 0.38
USP40-206ENST00000443711 ABCD1P33897 745 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 NCKAP1LP55160 1127 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 LRRC8DQ7L1W4 858 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 HAUS6Q7Z4H7 955 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 DPF3Q92784 378 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 OSMRQ99650 979 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 PPP1R12CQ9BZL4 782 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 IFT122Q9HBG6 1241 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 PRDM5Q9NQX1 630 aaPredicted RBP17.4■□□□□ 0.38
USP40-206ENST00000443711 TBC1D7Q9P0N9 293 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 PRKAG2Q9UGJ0 569 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 PHLPP2Q6ZVD8 1323 aa17.4■□□□□ 0.38
USP40-206ENST00000443711 K7ENM7 598 aa17.39■□□□□ 0.37
USP40-206ENST00000443711 K7ERI5 159 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms