RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 EYA4O95677 639 aa20.72■□□□□ 0.91
SHH-204ENST00000441114 ZSCAN20P17040 1043 aaPredicted RBP20.72■□□□□ 0.91
SHH-204ENST00000441114 ARL2P36404 184 aa20.72■□□□□ 0.91
SHH-204ENST00000441114 MXD4Q14582 209 aaPredicted RBP20.72■□□□□ 0.91
SHH-204ENST00000441114 MCPH1Q8NEM0 835 aa20.72■□□□□ 0.91
SHH-204ENST00000441114 CALML4Q96GE6 196 aa20.72■□□□□ 0.91
SHH-204ENST00000441114 TSPYL2Q9H2G4 693 aaPredicted RBP20.72■□□□□ 0.91
SHH-204ENST00000441114 CERS4Q9HA82 394 aa20.72■□□□□ 0.91
SHH-204ENST00000441114 IFT122Q9HBG6 1241 aa20.72■□□□□ 0.91
SHH-204ENST00000441114 ARHGEF15O94989 841 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 CYP11B2P19099 503 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 SFPQP23246 707 aaKnown RBP eCLIP20.71■□□□□ 0.91
SHH-204ENST00000441114 GLRA2P23416 452 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 TFDP1Q14186 410 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 SLC39A14Q15043 492 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 CATSPER4Q7RTX7 472 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 YME1L1Q96TA2 773 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 NT5C3AQ9H0P0 336 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 RGS18Q9NS28 235 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 MTMR10Q9NXD2 777 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 LRFN2Q9ULH4 789 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 INSL6Q9Y581 213 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 SRPRBQ9Y5M8 271 aaKnown RBP20.71■□□□□ 0.91
SHH-204ENST00000441114 TTC3P53804 2025 aa20.71■□□□□ 0.91
SHH-204ENST00000441114 TMEM265A0A087WTH1 108 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 PHKA2P46019 1235 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 CAPSQ13938 189 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 DSC3Q14574 896 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 KARSQ15046 597 aaKnown RBP20.7■□□□□ 0.9
SHH-204ENST00000441114 HYIQ5T013 277 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 SRGAP1Q7Z6B7 1085 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 EPSTI1Q96J88 318 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 MINDY3Q9H8M7 445 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 LAMA3Q16787 3333 aa20.7■□□□□ 0.9
SHH-204ENST00000441114 LRRIQ4A6NIV6 560 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 STAG3L1P0CL83 205 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 NASPP49321 788 aaPredicted RBP20.69■□□□□ 0.9
SHH-204ENST00000441114 SARSP49591 514 aaKnown RBP20.69■□□□□ 0.9
SHH-204ENST00000441114 HTRA4P83105 476 aaPredicted RBP20.69■□□□□ 0.9
SHH-204ENST00000441114 DHX8Q14562 1220 aaKnown RBP20.69■□□□□ 0.9
SHH-204ENST00000441114 GRIN2CQ14957 1233 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 TMEM119Q4V9L6 283 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 USP49Q70CQ1 688 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 SLC24A5Q71RS6 500 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 LINC00301Q8NCQ3 95 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 C1orf112Q9NSG2 853 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 PCDHB7Q9Y5E2 793 aa20.69■□□□□ 0.9
SHH-204ENST00000441114 LAMA2P24043 3122 aaKnown RBP20.69■□□□□ 0.9
SHH-204ENST00000441114 INO80B-WBP1J3KQ70 363 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 SPTLC2O15270 562 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 PLA2G4BP0C869 781 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 PTENP60484 403 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 TAP1Q03518 808 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 RAD51AP2Q09MP3 1159 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 RINT1Q6NUQ1 792 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 SPRED2Q7Z698 418 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 NPAS4Q8IUM7 802 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 KRI1Q8N9T8 703 aaKnown RBP20.68■□□□□ 0.9
SHH-204ENST00000441114 GUCD1Q96NT3 240 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 RUSC1Q9BVN2 902 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 PRDM12Q9H4Q4 367 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 PIN4Q9Y237 131 aaKnown RBP20.68■□□□□ 0.9
SHH-204ENST00000441114 ZDHHC9Q9Y397 364 aa20.68■□□□□ 0.9
SHH-204ENST00000441114 MYH11P35749 1972 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 C9IYK1 514 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 BRD1O95696 1058 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 PLCG1P19174 1290 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 GATMP50440 423 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 DNM1Q05193 864 aaKnown RBP20.67■□□□□ 0.9
SHH-204ENST00000441114 SYT2Q8N9I0 419 aaPredicted RBP20.67■□□□□ 0.9
SHH-204ENST00000441114 RNF169Q8NCN4 708 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 MYLIPQ8WY64 445 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 BSNDQ8WZ55 320 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 SYMPKQ92797 1274 aaKnown RBP20.67■□□□□ 0.9
SHH-204ENST00000441114 CDX2Q99626 313 aaPredicted RBP20.67■□□□□ 0.9
SHH-204ENST00000441114 CCSER1Q9C0I3 900 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 MTUS1Q9ULD2 1270 aa20.67■□□□□ 0.9
SHH-204ENST00000441114 LINC01553A4QN01 128 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 SLC26A4O43511 780 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 HIP1RO75146 1068 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 ERLIN2O94905 339 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 YEATS4O95619 227 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 TXLNAP40222 546 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 PAN2Q504Q3 1202 aaKnown RBP20.66■□□□□ 0.9
SHH-204ENST00000441114 TWF2Q6IBS0 349 aaKnown RBP20.66■□□□□ 0.9
SHH-204ENST00000441114 ARNTL2Q8WYA1 636 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 IFT74Q96LB3 600 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 CCDC39Q9UFE4 941 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 NLRC5Q86WI3 1866 aa20.66■□□□□ 0.9
SHH-204ENST00000441114 RFXAPO00287 272 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 DGKIO75912 1065 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 LIG1P18858 919 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 NCLP19338 710 aaKnown RBP20.65■□□□□ 0.9
SHH-204ENST00000441114 SLC12A3P55017 1021 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 POU5F1BQ06416 359 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 MCM6Q14566 821 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 FAM43BQ6ZT52 329 aaPredicted RBP20.65■□□□□ 0.9
SHH-204ENST00000441114 C1orf186Q6ZWK4 172 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 ZBTB8OSQ8IWT0 167 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 KCTD17Q8N5Z5 321 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms