RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 LSM14BQ9BX40 385 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 DDX47Q9H0S4 455 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 LRRC4CQ9HCJ2 640 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 BATF3Q9NR55 127 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 HERC5Q9UII4 1024 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 SLC12A4Q9UP95 1085 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 USP17L12C9JPN9 530 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 USP17L21D6R901 530 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 F8VZ95 297 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 CTNND1O60716 968 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 ZBTB48P10074 688 aaPredicted RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 PTPRAP18433 802 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 USP11P51784 963 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 DYNLL2Q96FJ2 89 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 CALR3Q96L12 384 aaKnown RBP9.3□□□□□ -0.92
HPS4-206ENST00000439453 C15orf41Q9Y2V0 281 aa9.3□□□□□ -0.92
HPS4-206ENST00000439453 CLTAP09496 248 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 CAP2P40123 477 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 ARID5AQ03989 594 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 DHX9Q08211 1270 aaKnown RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 MKRN3Q13064 507 aaKnown RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 C11orf91Q3C1V1 193 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 SBK1Q52WX2 424 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 UNC13DQ70J99 1090 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 SV2BQ7L1I2 683 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 SCYL3Q8IZE3 742 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 DAGLBQ8NCG7 672 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 ZNF317Q96PQ6 595 aaPredicted RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 ADAMTS1Q9UHI8 967 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 KCNH4Q9UQ05 1017 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 MYMKA6NI61 221 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 PGRMC1O00264 195 aaKnown RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 IGF2BP3O00425 579 aaKnown RBP eCLIP9.29□□□□□ -0.92
HPS4-206ENST00000439453 ANP32DO95626 131 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 ECE1P42892 770 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 TM4SF4P48230 202 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 NOGQ13253 232 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 RAPGEF1Q13905 1077 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 ENOX2Q16206 610 aaKnown RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 CALML4Q96GE6 196 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 MMTAG2Q9BU76 263 aaKnown RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.29□□□□□ -0.925e-8■■■■■ 32.9
HPS4-206ENST00000439453 NOC2LQ9Y3T9 749 aaKnown RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 AFG3L2Q9Y4W6 797 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 PVALEFA0A1B0GWK0 134 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 IRF6O14896 467 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 ASAP2O43150 1006 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 TECP42680 631 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 KLHL30Q0D2K2 578 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 ITIH4Q14624 930 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 KCTD19Q17RG1 926 aaPredicted RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 C16orf86Q6ZW13 317 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 DYMQ7RTS9 669 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 TBC1D1Q86TI0 1168 aaPredicted RBP9.29□□□□□ -0.92
HPS4-206ENST00000439453 CCHCR1Q8TD31 782 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 TSG101Q99816 390 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.29□□□□□ -0.921e-9■■□□□ 14.2
HPS4-206ENST00000439453 GOLPH3Q9H4A6 298 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 MCM9Q9NXL9 1143 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 AMACRQ9UHK6 382 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 PNMA2Q9UL42 364 aa9.29□□□□□ -0.92
HPS4-206ENST00000439453 CFAP73A6NFT4 308 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 BTNL10A8MVZ5 291 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 CCDC188H7C350 402 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 KRIT1O00522 736 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 GALNT17Q6IS24 598 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 HEATR3Q7Z4Q2 680 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 PIGWQ7Z7B1 504 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 BRI3BPQ8WY22 251 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 SERPINB13Q9UIV8 391 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 L3MBTL1Q9Y468 752 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 CAND2O75155 1236 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 CHN1P15882 459 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 GCKP35557 465 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 EIF3BP55884 814 aaKnown RBP9.28□□□□□ -0.92
HPS4-206ENST00000439453 SF3A3Q12874 501 aaKnown RBP eCLIP9.28□□□□□ -0.929e-7■■■■□ 22
HPS4-206ENST00000439453 PPIL2Q13356 520 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 DGKZQ13574 1117 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 ASIC2Q16515 512 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 PTPROQ16827 1216 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 METTL13Q8N6R0 699 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 ARMC2Q8NEN0 867 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 LMBR1Q8WVP7 490 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 R3HDMLQ9H3Y0 253 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 SLITRK6Q9H5Y7 841 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 TRPC6Q9Y210 931 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 CCNT1O60563 726 aaKnown RBP9.28□□□□□ -0.92
HPS4-206ENST00000439453 MMEP08473 750 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 ITGA4P13612 1032 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 PPATQ06203 517 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 LRRC41Q15345 812 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 LETM2Q2VYF4 491 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 BZW1Q7L1Q6 419 aaKnown RBP9.28□□□□□ -0.92
HPS4-206ENST00000439453 ERO1BQ86YB8 467 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 SIAH1Q8IUQ4 282 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 FAM133AQ8N9E0 248 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 CCDC26Q8TAB7 109 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 SPDL1Q96EA4 605 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 SLC10A4Q96EP9 437 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 OTUD5Q96G74 571 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms