RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RBBP8Q99708 897 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 NDST4Q9H3R1 872 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PIGUQ9H490 435 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 CENPXA8MT69 81 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PLD3Q8IV08 490 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 VPS37AQ8NEZ2 397 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 SH3TC2Q8TF17 1288 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 MAML1Q92585 1016 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 OSBPL8Q9BZF1 889 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 SOX13Q9UN79 622 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 A2ML1A8K2U0 1454 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 A0A1W2PQJ5 194 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 EIF2B5Q13144 721 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 TOGARAM2Q6ZUX3 1019 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ZC3H12CQ9C0D7 883 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 L2HGDHQ9H9P8 463 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PLA2R1Q13018 1463 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 MYL4P12829 197 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 KMT5BQ4FZB7 885 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 TTC8Q8TAM2 541 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 TRIM54Q9BYV2 358 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PCDHA13Q9Y5I0 950 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 CNTRLQ7Z7A1 2325 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 FMNL1O95466 1100 aaPredicted RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 PGM1P36871 562 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 FAM160B1Q5W0V3 765 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 LINC00301Q8NCQ3 95 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ACCSQ96QU6 501 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 MAPRE3Q9UPY8 281 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 H3BRJ5 948 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 CES2O00748 559 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ALOX5P09917 674 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 FAM45BPQ6NSW5 357 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 TRIM59Q8IWR1 403 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PRDM16Q9HAZ2 1276 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 BTBD7Q9P203 1132 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PLAAQ9Y263 795 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 PLEKHG2Q9H7P9 1386 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ANKRD65E5RJM6 399 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 IFNAR2P48551 515 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 DCTN2Q13561 401 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 TRAF7Q6Q0C0 670 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 KDM7AQ6ZMT4 941 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 TLK2Q86UE8 772 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 MAGEB6Q8N7X4 407 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 DLG3Q92796 817 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.63□□□□□ -1.191e-6■■□□□ 14.2
VPS53-204ENST00000437048 ABCA9Q8IUA7 1624 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 TMED2Q15363 201 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 E2F4Q16254 413 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 RABGAP1LQ5R372 815 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ALKBH5Q6P6C2 394 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 SPATA5Q8NB90 893 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 SERPINB12Q96P63 405 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 KRCC1Q9NPI7 259 aaPredicted RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 LZTS3O60299 673 aaPredicted RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 RPS6KA5O75582 802 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 GSTA3Q16772 222 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 ARMC3Q5W041 872 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 CYFIP1Q7L576 1253 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 CLEC4MQ9H2X3 399 aaPredicted RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 ZNF556Q9HAH1 456 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 WDR35Q9P2L0 1181 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 NOVA2Q9UNW9 492 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 RTCBQ9Y3I0 505 aaKnown RBP7.63□□□□□ -1.19
VPS53-204ENST00000437048 PCDHA5Q9Y5H7 936 aa7.63□□□□□ -1.19
VPS53-204ENST00000437048 TNFAIP8O95379 198 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ZCWPW2Q504Y3 356 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 GIMAP8Q8ND71 665 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 ATP8B4Q8TF62 1192 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 SEPT1Q8WYJ6 367 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 EPAS1Q99814 870 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ADGRA2Q96PE1 1338 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 H3BNX3 289 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ME3Q16798 604 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 WASHC2DQ5SRD0 308 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 RESP18Q5W5W9 173 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PACSIN1Q9BY11 444 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 SQORQ9Y6N5 450 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 COMMD3-BMI1R4GMX3 469 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 V9GY48 417 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 HMOX2P30519 316 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 LSP1P33241 339 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 RECQLP46063 649 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 AP3B2Q13367 1082 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 FAM173BQ6P4H8 233 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 SNIP1Q8TAD8 396 aaKnown RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 XAGE3Q8WTP9 111 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 GCNT4Q9P109 453 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 RABGEF1Q9UJ41 708 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ARHGEF40Q8TER5 1519 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PSMD14O00487 310 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ORC4O43929 436 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 CCT8P50990 548 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 RASGRP2Q7LDG7 609 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 CALML6Q8TD86 181 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ANKARQ7Z5J8 1434 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PRDM1O75626 825 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PNOCQ13519 176 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 BEGAINQ9BUH8 593 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms