RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 DENND3A2RUS2 1198 aa23.12■■□□□ 1.29
PTPRF-207ENST00000436724 STRNO43815 780 aa23.12■■□□□ 1.29
PTPRF-207ENST00000436724 NEK11Q8NG66 645 aa23.12■■□□□ 1.29
PTPRF-207ENST00000436724 GLG1Q92896 1179 aa23.12■■□□□ 1.29
PTPRF-207ENST00000436724 LSM14BQ9BX40 385 aaKnown RBP23.12■■□□□ 1.29
PTPRF-207ENST00000436724 TBX20Q9UMR3 447 aa23.12■■□□□ 1.29
PTPRF-207ENST00000436724 ZSCAN12O43309 604 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 EXOC3O60645 756 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 NOL4O94818 638 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 AFPP02771 609 aaKnown RBP23.11■■□□□ 1.29
PTPRF-207ENST00000436724 FAM160B1Q5W0V3 765 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 ACRBPQ8NEB7 543 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 GOLGA5Q8TBA6 731 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 AFAP1L1Q8TED9 768 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 NTPCRQ9BSD7 190 aaKnown RBP23.11■■□□□ 1.29
PTPRF-207ENST00000436724 NIFKQ9BYG3 293 aaKnown RBP23.11■■□□□ 1.29
PTPRF-207ENST00000436724 DHX33Q9H6R0 707 aaKnown RBP23.11■■□□□ 1.29
PTPRF-207ENST00000436724 FRMD4BQ9Y2L6 1034 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 TTLL4Q14679 1199 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 TSR1Q2NL82 804 aaKnown RBP23.11■■□□□ 1.29
PTPRF-207ENST00000436724 TAPT1Q6NXT6 567 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 DPP9Q86TI2 863 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 ABRAQ8N0Z2 381 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 ZNF397Q8NF99 534 aaPredicted RBP23.11■■□□□ 1.29
PTPRF-207ENST00000436724 SCFD2Q8WU76 684 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 AZI2Q9H6S1 392 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 NLRC4Q9NPP4 1024 aa23.11■■□□□ 1.29
PTPRF-207ENST00000436724 MEA1Q16626 185 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 SLC9A9Q8IVB4 645 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 SPIRE2Q8WWL2 714 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 BAP1Q92560 729 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 C17orf75Q9HAS0 396 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 LOC102724159A0A0B4J2E5 919 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 ANKRD63C9JTQ0 380 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 CCP110O43303 1012 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 CCDC175P0C221 793 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 SLC9A1P19634 815 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 GRB14Q14449 540 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 PWP2Q15269 919 aaKnown RBP23.1■■□□□ 1.29
PTPRF-207ENST00000436724 TARBP2Q15633 366 aaKnown RBP23.1■■□□□ 1.29
PTPRF-207ENST00000436724 RRAGAQ7L523 313 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 MKNK1Q9BUB5 465 aa23.1■■□□□ 1.29
PTPRF-207ENST00000436724 LRRC53A6NM62 1247 aa23.09■■□□□ 1.29
PTPRF-207ENST00000436724 ACTN1P12814 892 aa23.09■■□□□ 1.29
PTPRF-207ENST00000436724 SLC7A3Q8WY07 619 aa23.09■■□□□ 1.29
PTPRF-207ENST00000436724 NRBP2Q9NSY0 501 aa23.09■■□□□ 1.29
PTPRF-207ENST00000436724 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.09■■□□□ 1.29
PTPRF-207ENST00000436724 SNAI1O95863 264 aaPredicted RBP23.08■■□□□ 1.29
PTPRF-207ENST00000436724 TRIM49P0CI25 452 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 TRIM49CP0CI26 452 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 POLR2FP61218 127 aaKnown RBP23.08■■□□□ 1.29
PTPRF-207ENST00000436724 PPP2R3AQ06190 1150 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 RGMBQ6NW40 437 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 CACNA2D4Q7Z3S7 1137 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 PLEKHH3Q7Z736 793 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 MAP4K3Q8IVH8 894 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 SLC17A8Q8NDX2 589 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 ASAP3Q8TDY4 903 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 DIS3Q9Y2L1 958 aaKnown RBP23.08■■□□□ 1.29
PTPRF-207ENST00000436724 PLEKP08567 350 aaPredicted RBP23.08■■□□□ 1.29
PTPRF-207ENST00000436724 ADSSP30520 456 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 ADCYAP1R1P41586 468 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 RTP1P59025 263 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 DRP2Q13474 957 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 MAMDC4Q6UXC1 1216 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 TAS1R3Q7RTX0 852 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 KIF18AQ8NI77 898 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 IQCDQ96DY2 449 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 MAML3Q96JK9 1138 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 IFT74Q96LB3 600 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 HSPBP1Q9NZL4 362 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 PLAGL2Q9UPG8 496 aa23.08■■□□□ 1.29
PTPRF-207ENST00000436724 KIF2AO00139 706 aaPredicted RBP23.07■■□□□ 1.28
PTPRF-207ENST00000436724 LGR5O75473 907 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 CNGA1P29973 690 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 TRIM65Q6PJ69 517 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 SYT10Q6XYQ8 523 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 KATNBL1Q9H079 304 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 LZTFL1Q9NQ48 299 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 ZNHIT6Q9NWK9 470 aaKnown RBP23.07■■□□□ 1.28
PTPRF-207ENST00000436724 USP20Q9Y2K6 914 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 EPN1Q9Y6I3 576 aaPredicted RBP23.07■■□□□ 1.28
PTPRF-207ENST00000436724 DOCK3Q8IZD9 2030 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.07■■□□□ 1.28
PTPRF-207ENST00000436724 GOLGA8IPA6NC78 632 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 GOLGA8JA6NMD2 632 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 NDUFA10O95299 355 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 GLRA2P23416 452 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 MAPK4P31152 587 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 ARHGAP1Q07960 439 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 TAF1CQ15572 869 aaPredicted RBP23.07■■□□□ 1.28
PTPRF-207ENST00000436724 EXOC3L4Q17RC7 722 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 SLC39A4Q6P5W5 647 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 NPLOC4Q8TAT6 608 aa23.07■■□□□ 1.28
PTPRF-207ENST00000436724 DCAF8L1A6NGE4 600 aa23.06■■□□□ 1.28
PTPRF-207ENST00000436724 MANSC4A6NHS7 340 aaPredicted RBP23.06■■□□□ 1.28
PTPRF-207ENST00000436724 PON1P27169 355 aa23.06■■□□□ 1.28
PTPRF-207ENST00000436724 DLG4P78352 724 aa23.06■■□□□ 1.28
PTPRF-207ENST00000436724 DPY19L2P1Q6NXN4 242 aa23.06■■□□□ 1.28
PTPRF-207ENST00000436724 C12orf56Q8IXR9 622 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms