RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 RIN2Q8WYP3 895 aaPredicted RBP11.32□□□□□ -0.6
CD44-210ENST00000434472 CCDC43Q96MW1 224 aaKnown RBP11.32□□□□□ -0.6
CD44-210ENST00000434472 NAP1L3Q99457 506 aaPredicted RBP11.32□□□□□ -0.6
CD44-210ENST00000434472 BCAS3Q9H6U6 928 aa11.32□□□□□ -0.6
CD44-210ENST00000434472 WRAP73Q9P2S5 460 aaPredicted RBP11.32□□□□□ -0.6
CD44-210ENST00000434472 TTC7AQ9ULT0 858 aaPredicted RBP11.32□□□□□ -0.6
CD44-210ENST00000434472 ZNRF3Q9ULT6 936 aa11.32□□□□□ -0.6
CD44-210ENST00000434472 NFU1Q9UMS0 254 aa11.32□□□□□ -0.6
CD44-210ENST00000434472 RBBP6Q7Z6E9 1792 aaKnown RBP11.32□□□□□ -0.6
CD44-210ENST00000434472 ZBTB39O15060 712 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 RAD51CO43502 376 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 POLD1P28340 1107 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 HSPA9P38646 679 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 QARSP47897 775 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 JAK3P52333 1124 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 HADHBP55084 474 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 SKOR1P84550 965 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 TKFCQ3LXA3 575 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 LRIG3Q6UXM1 1119 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 MAATS1Q7Z4T9 603 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 NT5DC3Q86UY8 548 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 RHOT2Q8IXI1 618 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 KLHL7Q8IXQ5 586 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 NIM1KQ8IY84 436 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 IQCKQ8N0W5 287 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 DAW1Q8N136 415 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 METTL13Q8N6R0 699 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 LRRC45Q96CN5 670 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 HVCN1Q96D96 273 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 HOOK2Q96ED9 719 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 HES6Q96HZ4 224 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 ZBED3Q96IU2 234 aaPredicted RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 ZIM3Q96PE6 472 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 SYT11Q9BT88 431 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 TMEM39BQ9GZU3 492 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 AGO4Q9HCK5 861 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 KCNH7Q9NS40 1196 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 TCEAL9Q9UHQ7 104 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 EXOC7Q9UPT5 735 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 USP20Q9Y2K6 914 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 ANKRD62A6NC57 917 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 BHMG1C9JSJ3 638 aaPredicted RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 TULP2O00295 520 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 KRIT1O00522 736 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 DHX15O43143 795 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 ZBTB48P10074 688 aaPredicted RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 ITGB5P18084 799 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 VAMP7P51809 220 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 MRPS25P82663 173 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 TCEAL1Q15170 157 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 CBWD6Q4V339 395 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 CBWD3Q5JTY5 395 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 CBWD5Q5RIA9 395 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 XRRA1Q6P2D8 792 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 SAMD1Q6SPF0 538 aaPredicted RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 SLC30A10Q6XR72 485 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 GLYCTKQ8IVS8 523 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 KSR1Q8IVT5 923 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 XXYLT1Q8NBI6 393 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 CLEC4DQ8WXI8 215 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 AGBL1Q96MI9 1066 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 AGPAT1Q99943 283 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 HINFPQ9BQA5 517 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 CAPS2Q9BXY5 557 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 KIAA1683Q9H0B3 1180 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 FBXO28Q9NVF7 368 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 PGAP2Q9UHJ9 254 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 NOC2LQ9Y3T9 749 aaKnown RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 CTDP1Q9Y5B0 961 aaPredicted RBP11.31□□□□□ -0.6
CD44-210ENST00000434472 ZHX2Q9Y6X8 837 aa11.31□□□□□ -0.6
CD44-210ENST00000434472 TNS1Q9HBL0 1735 aaKnown RBP11.3□□□□□ -0.6
CD44-210ENST00000434472 PFASO15067 1338 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 ZNF536O15090 1300 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 DDX39AO00148 427 aaKnown RBP11.3□□□□□ -0.6
CD44-210ENST00000434472 TRIM49P0CI25 452 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 TRIM49CP0CI26 452 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 SFNP31947 248 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 INPP5BP32019 993 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 RARRES1P49788 294 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 MCCD1P59942 119 aaPredicted RBP11.3□□□□□ -0.6
CD44-210ENST00000434472 GTF2BQ00403 316 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 PPATQ06203 517 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 MTMR3Q13615 1198 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 MIGA2Q7L4E1 593 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 C4orf19Q8IY42 314 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 RDM1Q8NG50 284 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 SLC35G2Q8TBE7 412 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 MORC4Q8TE76 937 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 ZNF341Q9BYN7 854 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 GPR88Q9GZN0 384 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 FAM107BQ9H098 131 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 FAM114A2Q9NRY5 505 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 ANKEF1Q9NU02 776 aa11.3□□□□□ -0.6
CD44-210ENST00000434472 GOLGA6L10A0A0M3HER8 536 aa11.29□□□□□ -0.6
CD44-210ENST00000434472 GOLGA6L10A6NI86 522 aa11.29□□□□□ -0.6
CD44-210ENST00000434472 MIF4GDA9UHW6 222 aaKnown RBP11.29□□□□□ -0.6
CD44-210ENST00000434472 SART1O43290 800 aaKnown RBP11.29□□□□□ -0.6
CD44-210ENST00000434472 BUB1BO60566 1050 aaPredicted RBP11.29□□□□□ -0.6
CD44-210ENST00000434472 DKC1O60832 514 aaKnown RBP eCLIP11.29□□□□□ -0.6
CD44-210ENST00000434472 ZBED4O75132 1171 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms