RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 ZSCAN20P17040 1043 aaPredicted RBP20.72■□□□□ 0.91
SHH-202ENST00000430104 ARL2P36404 184 aa20.72■□□□□ 0.91
SHH-202ENST00000430104 MXD4Q14582 209 aaPredicted RBP20.72■□□□□ 0.91
SHH-202ENST00000430104 MCPH1Q8NEM0 835 aa20.72■□□□□ 0.91
SHH-202ENST00000430104 CALML4Q96GE6 196 aa20.72■□□□□ 0.91
SHH-202ENST00000430104 TSPYL2Q9H2G4 693 aaPredicted RBP20.72■□□□□ 0.91
SHH-202ENST00000430104 CERS4Q9HA82 394 aa20.72■□□□□ 0.91
SHH-202ENST00000430104 IFT122Q9HBG6 1241 aa20.72■□□□□ 0.91
SHH-202ENST00000430104 ARHGEF15O94989 841 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 CYP11B2P19099 503 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 SFPQP23246 707 aaKnown RBP eCLIP20.71■□□□□ 0.91
SHH-202ENST00000430104 GLRA2P23416 452 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 TFDP1Q14186 410 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 SLC39A14Q15043 492 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 CATSPER4Q7RTX7 472 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 YME1L1Q96TA2 773 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 NT5C3AQ9H0P0 336 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 RGS18Q9NS28 235 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 MTMR10Q9NXD2 777 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 LRFN2Q9ULH4 789 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 INSL6Q9Y581 213 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 SRPRBQ9Y5M8 271 aaKnown RBP20.71■□□□□ 0.91
SHH-202ENST00000430104 TTC3P53804 2025 aa20.71■□□□□ 0.91
SHH-202ENST00000430104 TMEM265A0A087WTH1 108 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 PHKA2P46019 1235 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 CAPSQ13938 189 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 DSC3Q14574 896 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 KARSQ15046 597 aaKnown RBP20.7■□□□□ 0.9
SHH-202ENST00000430104 HYIQ5T013 277 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 SRGAP1Q7Z6B7 1085 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 EPSTI1Q96J88 318 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 MINDY3Q9H8M7 445 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 LAMA3Q16787 3333 aa20.7■□□□□ 0.9
SHH-202ENST00000430104 LRRIQ4A6NIV6 560 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 STAG3L1P0CL83 205 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 NASPP49321 788 aaPredicted RBP20.69■□□□□ 0.9
SHH-202ENST00000430104 SARSP49591 514 aaKnown RBP20.69■□□□□ 0.9
SHH-202ENST00000430104 HTRA4P83105 476 aaPredicted RBP20.69■□□□□ 0.9
SHH-202ENST00000430104 DHX8Q14562 1220 aaKnown RBP20.69■□□□□ 0.9
SHH-202ENST00000430104 GRIN2CQ14957 1233 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 TMEM119Q4V9L6 283 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 USP49Q70CQ1 688 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 SLC24A5Q71RS6 500 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 LINC00301Q8NCQ3 95 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 C1orf112Q9NSG2 853 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 PCDHB7Q9Y5E2 793 aa20.69■□□□□ 0.9
SHH-202ENST00000430104 LAMA2P24043 3122 aaKnown RBP20.69■□□□□ 0.9
SHH-202ENST00000430104 INO80B-WBP1J3KQ70 363 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 SPTLC2O15270 562 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 PLA2G4BP0C869 781 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 PTENP60484 403 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 TAP1Q03518 808 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 RAD51AP2Q09MP3 1159 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 RINT1Q6NUQ1 792 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 SPRED2Q7Z698 418 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 NPAS4Q8IUM7 802 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 KRI1Q8N9T8 703 aaKnown RBP20.68■□□□□ 0.9
SHH-202ENST00000430104 GUCD1Q96NT3 240 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 RUSC1Q9BVN2 902 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 PRDM12Q9H4Q4 367 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 PIN4Q9Y237 131 aaKnown RBP20.68■□□□□ 0.9
SHH-202ENST00000430104 ZDHHC9Q9Y397 364 aa20.68■□□□□ 0.9
SHH-202ENST00000430104 MYH11P35749 1972 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 C9IYK1 514 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 BRD1O95696 1058 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 PLCG1P19174 1290 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 GATMP50440 423 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 DNM1Q05193 864 aaKnown RBP20.67■□□□□ 0.9
SHH-202ENST00000430104 SYT2Q8N9I0 419 aaPredicted RBP20.67■□□□□ 0.9
SHH-202ENST00000430104 RNF169Q8NCN4 708 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 MYLIPQ8WY64 445 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 BSNDQ8WZ55 320 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 SYMPKQ92797 1274 aaKnown RBP20.67■□□□□ 0.9
SHH-202ENST00000430104 CDX2Q99626 313 aaPredicted RBP20.67■□□□□ 0.9
SHH-202ENST00000430104 CCSER1Q9C0I3 900 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 MTUS1Q9ULD2 1270 aa20.67■□□□□ 0.9
SHH-202ENST00000430104 LINC01553A4QN01 128 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 SLC26A4O43511 780 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 HIP1RO75146 1068 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 ERLIN2O94905 339 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 YEATS4O95619 227 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 TXLNAP40222 546 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 PAN2Q504Q3 1202 aaKnown RBP20.66■□□□□ 0.9
SHH-202ENST00000430104 TWF2Q6IBS0 349 aaKnown RBP20.66■□□□□ 0.9
SHH-202ENST00000430104 ARNTL2Q8WYA1 636 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 IFT74Q96LB3 600 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 CCDC39Q9UFE4 941 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 NLRC5Q86WI3 1866 aa20.66■□□□□ 0.9
SHH-202ENST00000430104 RFXAPO00287 272 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 DGKIO75912 1065 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 LIG1P18858 919 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 NCLP19338 710 aaKnown RBP20.65■□□□□ 0.9
SHH-202ENST00000430104 SLC12A3P55017 1021 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 POU5F1BQ06416 359 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 MCM6Q14566 821 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 FAM43BQ6ZT52 329 aaPredicted RBP20.65■□□□□ 0.9
SHH-202ENST00000430104 C1orf186Q6ZWK4 172 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 ZBTB8OSQ8IWT0 167 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 KCTD17Q8N5Z5 321 aa20.65■□□□□ 0.9
SHH-202ENST00000430104 DEPTORQ8TB45 409 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms