RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ZNF710Q8N1W2 664 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 DAGLBQ8NCG7 672 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 FDXACB1Q9BRP7 624 aaPredicted RBP16.3■□□□□ 0.2
SDC1-204ENST00000429035 PHF7Q9BWX1 381 aaPredicted RBP16.3■□□□□ 0.2
SDC1-204ENST00000429035 MRPL9Q9BYD2 267 aaKnown RBP16.3■□□□□ 0.2
SDC1-204ENST00000429035 SPG21Q9NZD8 308 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 SUCLA2Q9P2R7 463 aaPredicted RBP16.3■□□□□ 0.2
SDC1-204ENST00000429035 LZTS1Q9Y250 596 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 INPP5FQ9Y2H2 1132 aa16.3■□□□□ 0.2
SDC1-204ENST00000429035 HIDE1A8MVS5 230 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 MARCH6O60337 910 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 DTNBO60941 627 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 ZC3H11AO75152 810 aaKnown RBP eCLIP16.29■□□□□ 0.2
SDC1-204ENST00000429035 ATF7P17544 494 aaPredicted RBP16.29■□□□□ 0.2
SDC1-204ENST00000429035 SMC1AQ14683 1233 aaKnown RBP16.29■□□□□ 0.2
SDC1-204ENST00000429035 TARBP2Q15633 366 aaKnown RBP16.29■□□□□ 0.2
SDC1-204ENST00000429035 CATSPER4Q7RTX7 472 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 ZBTB33Q86T24 672 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 TMEM87AQ8NBN3 555 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 ETNPPLQ8TBG4 499 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 LPPQ93052 612 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 ZNF274Q96GC6 653 aaPredicted RBP16.29■□□□□ 0.2
SDC1-204ENST00000429035 TMEM169Q96HH4 297 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 MFSD14AQ96MC6 490 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 NGRNQ9NPE2 291 aaKnown RBP16.29■□□□□ 0.2
SDC1-204ENST00000429035 TSHZ2Q9NRE2 1034 aa16.29■□□□□ 0.2
SDC1-204ENST00000429035 A0A0U1RQF3 1178 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 LOC730098B7Z3J9 87 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 CDKL5O76039 1030 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 PSMC5P62195 406 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 CBX2Q14781 532 aaPredicted RBP16.28■□□□□ 0.2
SDC1-204ENST00000429035 ANKRD54Q6NXT1 300 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 MOXD1Q6UVY6 613 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 ALYREFQ86V81 257 aaKnown RBP16.28■□□□□ 0.2
SDC1-204ENST00000429035 KSR1Q8IVT5 923 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 SLC39A11Q8N1S5 342 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 EDAQ92838 391 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 FBXL18Q96ME1 805 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 NIFKQ9BYG3 293 aaKnown RBP16.28■□□□□ 0.2
SDC1-204ENST00000429035 GBP3Q9H0R5 595 aa16.28■□□□□ 0.2
SDC1-204ENST00000429035 CYP3A7-CYP3A51PA0A087WV96 503 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 TMEM221A6NGB7 291 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 M0R296 226 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 M0R2N6 131 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 EML1O00423 815 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 EOMESO95936 686 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 XBP1P17861 261 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 CYP3A7P24462 503 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 PHKA2P46019 1235 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 POLGP54098 1239 aaPredicted RBP16.27■□□□□ 0.2
SDC1-204ENST00000429035 BCAR1P56945 870 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 SCRN1Q12765 414 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 NPY5RQ15761 445 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 GALNT17Q6IS24 598 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 NEK8Q86SG6 692 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 ZNF598Q86UK7 904 aaKnown RBP16.27■□□□□ 0.2
SDC1-204ENST00000429035 ZNF410Q86VK4 478 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 CASP10Q92851 521 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 TM6SF1Q9BZW5 370 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 INO80BQ9C086 356 aaPredicted RBP16.27■□□□□ 0.2
SDC1-204ENST00000429035 CDH22Q9UJ99 828 aa16.27■□□□□ 0.2
SDC1-204ENST00000429035 KMT2EQ8IZD2 1858 aa16.27■□□□□ 0.19
SDC1-204ENST00000429035 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 CCNT1O60563 726 aaKnown RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 ALDH7A1P49419 539 aaKnown RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 NPEPPSP55786 919 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 ZXDAP98168 799 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 RNASELQ05823 741 aaKnown RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 BMS1Q14692 1282 aaKnown RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 NCAPH2Q6IBW4 605 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 GLB1LQ6UWU2 654 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 TRIM67Q6ZTA4 783 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 PIK3AP1Q6ZUJ8 805 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 SUGP1Q8IWZ8 645 aaKnown RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 SUSD6Q92537 303 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 PBXIP1Q96AQ6 731 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 CEP170P1Q96L14 293 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 MBOAT7Q96N66 472 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 JPH2Q9BR39 696 aaPredicted RBP16.26■□□□□ 0.19
SDC1-204ENST00000429035 GJB4Q9NTQ9 266 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 FAM105AQ9NUU6 356 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 HCFC2Q9Y5Z7 792 aa16.26■□□□□ 0.19
SDC1-204ENST00000429035 SPDYE4A6NLX3 237 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 EPB41L2O43491 1005 aaKnown RBP16.25■□□□□ 0.19
SDC1-204ENST00000429035 DKC1O60832 514 aaKnown RBP eCLIP16.25■□□□□ 0.19
SDC1-204ENST00000429035 MAFO75444 373 aaPredicted RBP16.25■□□□□ 0.19
SDC1-204ENST00000429035 STBD1O95210 358 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 SKIP12755 728 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 QARSP47897 775 aaKnown RBP16.25■□□□□ 0.19
SDC1-204ENST00000429035 FOSBP53539 338 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 CDC42EP1Q00587 391 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 NHLH1Q02575 133 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 TPRNQ4KMQ1 711 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 SYCE2Q6PIF2 218 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 B3GNT9Q6UX72 402 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 ANO5Q75V66 913 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 VPS52Q8N1B4 723 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 AUTS2Q8WXX7 1259 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 SLC7A3Q8WY07 619 aa16.25■□□□□ 0.19
SDC1-204ENST00000429035 CEP89Q96ST8 783 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms