RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CKAP2Q8WWK9 683 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 CRAMP1Q96RY5 1269 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 PIGSQ96S52 555 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 ROPN1BQ9BZX4 212 aaPredicted RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 ROPN1Q9HAT0 212 aaPredicted RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 MKNK2Q9HBH9 465 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 BMP2KQ9NSY1 1161 aaPredicted RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 PARP2Q9UGN5 583 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 PCYOX1Q9UHG3 505 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 ZMYND8Q9ULU4 1186 aaPredicted RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 PFASO15067 1338 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 EIF4E1BA6NMX2 242 aaKnown RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 ABLIM1O14639 778 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 HIP1RO75146 1068 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 GFPT2O94808 682 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 CHRNA3P32297 505 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 CCDC15Q0P6D6 951 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 RNF43Q68DV7 783 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 TTC27Q6P3X3 843 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 GJB7Q6PEY0 223 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 FBXO33Q7Z6M2 555 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 SLC44A5Q8NCS7 719 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 HAS1Q92839 578 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 RNPEPL1Q9HAU8 725 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 ANKIB1Q9P2G1 1089 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 SEC63Q9UGP8 760 aaKnown RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 TRAF3IP3Q9Y228 551 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 MAST2Q6P0Q8 1798 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 E7ENQ6 273 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 E9PMD0 336 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 PODXLO00592 558 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 PEX11AO75192 247 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 XRCC5P13010 732 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 ALAS1P13196 640 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 KRT13P13646 458 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 PAPOLAP51003 745 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 CASP5P51878 434 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 CLUL1Q15846 466 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 CWF19L1Q69YN2 538 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 AADACL2Q6P093 401 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 USP17L2Q6R6M4 530 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ZDHHC14Q8IZN3 488 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ARHGEF2Q92974 986 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 RAB3IPQ96QF0 476 aaPredicted RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 SYT11Q9BT88 431 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 TRIM7Q9C029 511 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 MPHOSPH10O00566 681 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 MAP3K13O43283 966 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ATF3P18847 181 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 CYP11B2P19099 503 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 CALB2P22676 271 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 CTNNA2P26232 953 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 KLRK1P26718 216 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 TUBP50607 506 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 LONRF1Q17RB8 773 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 PARP6Q2NL67 630 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 TRIM68Q6AZZ1 485 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 OTUD6AQ7L8S5 288 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ECHDC2Q86YB7 292 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 GLYCTKQ8IVS8 523 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 MFN1Q8IWA4 741 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ART4Q93070 314 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ARHGEF26Q96DR7 871 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 ETNK1Q9HBU6 452 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 PAPOLBQ9NRJ5 636 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 TMOD4Q9NZQ9 345 aa11.54□□□□□ -0.56
USP54-204ENST00000422491 CPSF2Q9P2I0 782 aaKnown RBP11.54□□□□□ -0.56
USP54-204ENST00000422491 GPR75-ASB3A0A0A6YYF3 556 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 ANKRD63C9JTQ0 380 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 AKAP3O75969 853 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 NPTXRO95502 500 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 GH1P01241 217 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 PLA2G4BP0C869 781 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 PLCG2P16885 1265 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 SMARCA1P28370 1054 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 RPS6KA3P51812 740 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 MRPS35P82673 323 aaKnown RBP11.53□□□□□ -0.56
USP54-204ENST00000422491 ACVR2BQ13705 512 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 MPP2Q14168 576 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 PARP10Q53GL7 1025 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 GJA10Q969M2 543 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 RUNDC3BQ96NL0 473 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 TSC22D3Q99576 134 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 VAT1LQ9HCJ6 419 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 MLXIPLQ9NP71 852 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 GCNT4Q9P109 453 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 COG5Q9UP83 839 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 ASB3Q9Y575 518 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 SYNGAP1Q96PV0 1343 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 SPDYE5A6NIY4 337 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 TPBGLP0DKB5 382 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 HSPA6P17066 643 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 GM2AP17900 193 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 LMNB1P20700 586 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 RASA1P20936 1047 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 ATP6V1C1P21283 382 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 ABCB4P21439 1286 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 HOXD13P35453 343 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 ROR2Q01974 943 aaKnown RBP11.53□□□□□ -0.56
USP54-204ENST00000422491 MKRN3Q13064 507 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms