RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CFAP45Q9UL16 551 aa13.86□□□□□ -0.19
SKA1-203ENST00000417656 EFCAB14O75071 495 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 CSDE1O75534 798 aaKnown RBP13.85□□□□□ -0.19
SKA1-203ENST00000417656 PLA2G4BP0C869 781 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 SRGAP2CP0DJJ0 459 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 ATP2A2P16615 1042 aaKnown RBP13.85□□□□□ -0.19
SKA1-203ENST00000417656 GLRA2P23416 452 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 EIF4BP23588 611 aaKnown RBP13.85□□□□□ -0.19
SKA1-203ENST00000417656 ARL2P36404 184 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 ME1P48163 572 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 RNF149Q8NC42 400 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 BSNDQ8WZ55 320 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 LRCH3Q96II8 777 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 GCOM2Q9BZD3 368 aaPredicted RBP13.85□□□□□ -0.19
SKA1-203ENST00000417656 BLOC1S4Q9NUP1 217 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 ST3GAL5Q9UNP4 418 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 ATP6V1DQ9Y5K8 247 aa13.85□□□□□ -0.19
SKA1-203ENST00000417656 A0A087X0B3 334 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.84□□□□□ -0.19
SKA1-203ENST00000417656 MGEA5O60502 916 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 CUTAO60888 179 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 AMHP03971 560 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 FXR1P51114 621 aaKnown RBP eCLIP13.84□□□□□ -0.19
SKA1-203ENST00000417656 SLC12A3P55017 1021 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 CDC42EP1Q00587 391 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 TFDP1Q14186 410 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 DHX8Q14562 1220 aaKnown RBP13.84□□□□□ -0.19
SKA1-203ENST00000417656 MXD4Q14582 209 aaPredicted RBP13.84□□□□□ -0.19
SKA1-203ENST00000417656 AXDND1Q5T1B0 1012 aaPredicted RBP13.84□□□□□ -0.19
SKA1-203ENST00000417656 RINT1Q6NUQ1 792 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 SHC4Q6S5L8 630 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 MYOCDQ8IZQ8 938 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 KCTD17Q8N5Z5 321 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 SYT2Q8N9I0 419 aaPredicted RBP13.84□□□□□ -0.19
SKA1-203ENST00000417656 LEO1Q8WVC0 666 aaPredicted RBP13.84□□□□□ -0.19
SKA1-203ENST00000417656 RAD54LQ92698 747 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 IFT122Q9HBG6 1241 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 POLD4Q9HCU8 107 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 TSHZ2Q9NRE2 1034 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 CCDC39Q9UFE4 941 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 PCDHA7Q9UN72 937 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 LAMA3Q16787 3333 aa13.84□□□□□ -0.19
SKA1-203ENST00000417656 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.83□□□□□ -0.2
SKA1-203ENST00000417656 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.83□□□□□ -0.2
SKA1-203ENST00000417656 LRRIQ4A6NIV6 560 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 GPR182O15218 404 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 HIP1RO75146 1068 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 SFPQP23246 707 aaKnown RBP eCLIP13.83□□□□□ -0.2
SKA1-203ENST00000417656 PBX2P40425 430 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 PHKA2P46019 1235 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 RABGGTBP53611 331 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 SMAD3P84022 425 aaKnown RBP13.83□□□□□ -0.2
SKA1-203ENST00000417656 RAD51AP2Q09MP3 1159 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 MAPK7Q13164 816 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 MCM6Q14566 821 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 ODR4Q5SWX8 454 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 FAM117BQ6P1L5 589 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 C1orf186Q6ZWK4 172 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 GPBP1Q86WP2 473 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 HERC6Q8IVU3 1022 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 DAW1Q8N136 415 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 LARP4BQ92615 738 aaKnown RBP13.83□□□□□ -0.2
SKA1-203ENST00000417656 SPATA32Q96LK8 384 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 FTHL17Q9BXU8 183 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 MINDY3Q9H8M7 445 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 STK17AQ9UEE5 414 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 RCOR1Q9UKL0 485 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 MYH11P35749 1972 aa13.83□□□□□ -0.2
SKA1-203ENST00000417656 COL4A6Q14031 1691 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 NPHP3-ACAD11A0A0J9YXS1 232 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 ASAP2O43150 1006 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 IBSPP21815 317 aaPredicted RBP13.82□□□□□ -0.2
SKA1-203ENST00000417656 STAT6P42226 847 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 PTENP60484 403 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 NAALADL2Q58DX5 795 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 RRAGBQ5VZM2 374 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 CATSPER4Q7RTX7 472 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 SRGAP1Q7Z6B7 1085 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 RTN4RL1Q86UN2 441 aaPredicted RBP13.82□□□□□ -0.2
SKA1-203ENST00000417656 PDILTQ8N807 584 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 PHOSPHO2Q8TCD6 241 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 KIFAP3Q92845 792 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 ADAM2Q99965 735 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 KIFC3Q9BVG8 833 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 PBX4Q9BYU1 374 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 TSPYL2Q9H2G4 693 aaPredicted RBP13.82□□□□□ -0.2
SKA1-203ENST00000417656 GDPD2Q9HCC8 539 aa13.82□□□□□ -0.2
SKA1-203ENST00000417656 CIZ1Q9ULV3 898 aaPredicted RBP13.82□□□□□ -0.2
SKA1-203ENST00000417656 YBX2Q9Y2T7 364 aaKnown RBP13.82□□□□□ -0.2
SKA1-203ENST00000417656 DENND3A2RUS2 1198 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 INO80B-WBP1J3KQ70 363 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 ENPP3O14638 875 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 MYOGP15173 224 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 GUCY2CP25092 1073 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 DNAJB2P25686 324 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 MBTD1Q05BQ5 628 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 DSC3Q14574 896 aa13.81□□□□□ -0.2
SKA1-203ENST00000417656 CDCA2Q69YH5 1023 aaPredicted RBP13.81□□□□□ -0.2
SKA1-203ENST00000417656 CCDC73Q6ZRK6 1079 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms