RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PCDHGA3Q9Y5H0 932 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 PCDHGA2Q9Y5H1 932 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 ST20-MTHFSA0A0A6YYL1 179 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 CAND2O75155 1236 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 IL33O95760 270 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 MAP4K4O95819 1239 aaPredicted RBP6.05□□□□□ -1.44
VPS54-204ENST00000416400 IL18BPO95998 194 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 KNG1P01042 644 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 PRLP01236 227 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 CLEC2LP0C7M8 214 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 CYP2C19P33261 490 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 MANFP55145 182 aaKnown RBP6.05□□□□□ -1.44
VPS54-204ENST00000416400 DLX2Q07687 328 aaPredicted RBP6.05□□□□□ -1.44
VPS54-204ENST00000416400 CT83Q5H943 113 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 PRR31Q5SQ13 230 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 LRSAM1Q6UWE0 723 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 TPH2Q8IWU9 490 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 TXNDC5Q8NBS9 432 aaKnown RBP6.05□□□□□ -1.44
VPS54-204ENST00000416400 SSH1Q8WYL5 1049 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 FOXRED1Q96CU9 486 aaPredicted RBP6.05□□□□□ -1.44
VPS54-204ENST00000416400 HSPBAP1Q96EW2 488 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 TEKT5Q96M29 485 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 AMNQ9BXJ7 453 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 ANO3Q9BYT9 981 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 QRSL1Q9H0R6 528 aaKnown RBP6.05□□□□□ -1.44
VPS54-204ENST00000416400 SEMA4AQ9H3S1 761 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 ZCCHC4Q9H5U6 513 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 ZDHHC9Q9Y397 364 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 PPP2R3BQ9Y5P8 575 aa6.05□□□□□ -1.44
VPS54-204ENST00000416400 C9orf118A6NHY6 69 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 CUTAO60888 179 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 MPIG6BO95866 241 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 IL13RA1P78552 427 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 SRSF2Q01130 221 aaKnown RBP6.04□□□□□ -1.44
VPS54-204ENST00000416400 NFATC3Q12968 1075 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 MOGSQ13724 837 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 HLTFQ14527 1009 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS54-204ENST00000416400 RTP5Q14D33 572 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 UGT8Q16880 541 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS54-204ENST00000416400 TOR2AQ5JU69 321 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 ZBTB41Q5SVQ8 909 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 CCDC62Q6P9F0 684 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 BORAQ6PGQ7 559 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 C1QL4Q86Z23 238 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 TP53I13Q8NBR0 393 aaPredicted RBP6.04□□□□□ -1.44
VPS54-204ENST00000416400 ZCCHC14Q8WYQ9 949 aaKnown RBP6.04□□□□□ -1.44
VPS54-204ENST00000416400 NUP88Q99567 741 aaPredicted RBP6.04□□□□□ -1.44
VPS54-204ENST00000416400 WNT8AQ9H1J5 351 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 SYNPO2Q9UMS6 1093 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 EDARQ9UNE0 448 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 GPR45Q9Y5Y3 372 aa6.04□□□□□ -1.44
VPS54-204ENST00000416400 MROH6A6NGR9 719 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 PRPF6O94906 941 aaKnown RBP6.03□□□□□ -1.44
VPS54-204ENST00000416400 KRT18P05783 430 aaKnown RBP6.03□□□□□ -1.44
VPS54-204ENST00000416400 MTHFD2P13995 350 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 AGXTP21549 392 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 POLD1P28340 1107 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 ADCY8P40145 1251 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 BCAR1P56945 870 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 CD83Q01151 205 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 ADCY2Q08462 1091 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 ZNF568Q3ZCX4 644 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 MINDY4Q4G0A6 757 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 NT5DC1Q5TFE4 455 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 GRAMD4Q6IC98 578 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 ZNF761Q86XN6 746 aaPredicted RBP6.03□□□□□ -1.44
VPS54-204ENST00000416400 KLHL36Q8N4N3 616 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 JADE3Q92613 823 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 EAF2Q96CJ1 260 aaPredicted RBP6.03□□□□□ -1.44
VPS54-204ENST00000416400 CLIP3Q96DZ5 547 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 RAX2Q96IS3 184 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 YTHDC1Q96MU7 727 aaKnown RBP6.03□□□□□ -1.44
VPS54-204ENST00000416400 MYL10Q9BUA6 226 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 ZBTB21Q9ULJ3 1066 aa6.03□□□□□ -1.44
VPS54-204ENST00000416400 A0A0G2JNJ9 132 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 PRSS38A1L453 326 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 ELL2O00472 640 aaPredicted RBP6.02□□□□□ -1.45
VPS54-204ENST00000416400 PLIN1O60240 522 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 LPLP06858 475 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 OSMP13725 252 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 MTNR1BP49286 362 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 RGS3P49796 1198 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 MEOX1P50221 254 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 MRPS9P82933 396 aaKnown RBP6.02□□□□□ -1.45
VPS54-204ENST00000416400 MYBPC3Q14896 1274 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 STILQ15468 1287 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 PITRM1Q5JRX3 1037 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 KIAA1841Q6NSI8 718 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 Q6ZUG5 572 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 REXO1L1PQ8IX06 675 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 MARCH10Q8NA82 808 aaPredicted RBP6.02□□□□□ -1.45
VPS54-204ENST00000416400 NUDT10Q8NFP7 164 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 NUDT11Q96G61 164 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 AIFM3Q96NN9 605 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 CSRNP2Q9H175 543 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 Q9UFV3 132 aa6.02□□□□□ -1.45
VPS54-204ENST00000416400 VSTM5A8MXK1 200 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 TRIM13O60858 407 aa6.01□□□□□ -1.45
VPS54-204ENST00000416400 ZRANB2O95218 330 aaKnown RBP eCLIP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms