RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 NCR1O76036 304 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 GLIPR1P48060 266 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 SOX10P56693 466 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 SNW1Q13573 536 aaKnown RBP-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 TP53BP2Q13625 1128 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 KEAP1Q14145 624 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 BEAN1Q3B7T3 259 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 DAB2IPQ5VWQ8 1189 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 PELI3Q8N2H9 469 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 MB21D1Q8N884 522 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 MAPK1IP1LQ8NDC0 245 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 PRSS3P2Q8NHM4 247 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 B4GALNT2Q8NHY0 566 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZNF721Q8TF20 911 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 NUDCD2Q8WVJ2 157 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 SEC14L1Q92503 715 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 CLP1Q92989 425 aaKnown RBP-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 ACSF2Q96CM8 615 aaPredicted RBP-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 PELI2Q9HAT8 420 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZFYVE28Q9HCC9 887 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 CHST7Q9NS84 486 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 KCND1Q9NSA2 647 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 ABCA4P78363 2273 aa-0.67□□□□□ -2.52
RNU4-88P-201ENST00000411220 ABCA13Q86UQ4 5058 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 HIVEP1P15822 2718 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 TCP11X1B4DZS4 312 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 MEIS1O00470 390 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 APOHP02749 345 aaPredicted RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 PIM1P11309 404 aaPredicted RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 SOX11P35716 441 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 CTSKP43235 329 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 ETV4P43268 484 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 HGFACQ04756 655 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 ILF3Q12906 894 aaKnown RBP eCLIP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 TMEM119Q4V9L6 283 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 SEZ6Q53EL9 994 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 CEP78Q5JTW2 689 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 SPDYCQ5MJ68 293 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 PRPF40BQ6NWY9 871 aaKnown RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 LLGL2Q6P1M3 1020 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 STPG3Q8N7X2 389 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 OR14K1Q8NGZ2 314 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 EDEM1Q92611 657 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 CCDC74AQ96AQ1 378 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 SNX27Q96L92 541 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 INPP4AQ96PE3 977 aaPredicted RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 FOXP1Q9H334 677 aaPredicted RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 STIM2Q9P246 746 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 SRP68Q9UHB9 627 aaKnown RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 EIF2B4Q9UI10 523 aaKnown RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZFP69BQ9UJL9 534 aa-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 COL16A1Q07092 1604 aaPredicted RBP-0.68□□□□□ -2.52
RNU4-88P-201ENST00000411220 LAMA5O15230 3695 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 TENM2Q9NT68 2774 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 C2orf71A6NGG8 1288 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZG16O60844 167 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 MFAP3LO75121 409 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 IPO13O94829 963 aaKnown RBP-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 FRMD6-AS1P0C7T7 363 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 CDC25CP30307 473 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 CHMP4BP1P59074 171 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 DNM1Q05193 864 aaKnown RBP-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 Q4G0T1 1027 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 FAM76BQ5HYJ3 339 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZNF484Q5JVG2 852 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 SHC4Q6S5L8 630 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 CRTC3Q6UUV7 619 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 AMIGO2Q86SJ2 522 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 PLEKHM2Q8IWE5 1019 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 C11orf53Q8IXP5 236 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 CPEB3Q8NE35 698 aaKnown RBP-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 KRT35Q92764 455 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 Q96MF0 132 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 OR10A2Q9H208 303 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZNF556Q9HAH1 456 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 RNF181Q9P0P0 153 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 MKRN1Q9UHC7 482 aaKnown RBP-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 KCNG2Q9UJ96 466 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 SAMM50Q9Y512 469 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 BDP1A6H8Y1 2624 aa-0.69□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZNF646O15015 1829 aaPredicted RBP-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 HELZ2Q9BYK8 2649 aaKnown RBP-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 ZANQ9Y493 2812 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 CYP2D7A0A087X1C5 515 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 SPDEFO95238 335 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 LRG1P02750 347 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 PDGFAP04085 211 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 TUBB4AP04350 444 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 DCAF8L2P0C7V8 631 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 CYP2D6P10635 497 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 DDX6P26196 483 aaKnown RBP eCLIP-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 RNF4P78317 190 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 NFATC2Q13469 925 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 UBXN2BQ14CS0 331 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 LRRC14Q15048 493 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 TRIM71Q2Q1W2 868 aaKnown RBP-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 DCAF17Q5H9S7 520 aaPredicted RBP-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 PMS2CLQ68D20 193 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 IQSEC1Q6DN90 963 aa-0.7□□□□□ -2.52
RNU4-88P-201ENST00000411220 OLFM4Q6UX06 510 aa-0.7□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms