RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ENTPD3O75355 529 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 CAP2P40123 477 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 MARCKSL1P49006 195 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 TNIP1Q15025 636 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 HYIQ5T013 277 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 FAM151AQ8WW52 585 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 CWC15Q9P013 229 aaKnown RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 TRAF3IP3Q9Y228 551 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 ATP8A1Q9Y2Q0 1164 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 RIPK3Q9Y572 518 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 TNNC1P63316 161 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 PPP3CAQ08209 521 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 SNX1Q13596 522 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 ATG4CQ96DT6 458 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 MED4Q9NPJ6 270 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 HGSO14964 777 aaPredicted RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 SEC24CP53992 1094 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 EPHB4P54760 987 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 IRX5P78411 483 aaPredicted RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 ADCY1Q08828 1119 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 ITGB3BPQ13352 177 aaPredicted RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 TRIP13Q15645 432 aaPredicted RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 MEI1Q5TIA1 1274 aa14.53□□□□□ -0.08
VPS54-203ENST00000409558 NUCKS1Q9H1E3 243 aaKnown RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 METTL14Q9HCE5 456 aaKnown RBP14.53□□□□□ -0.08
VPS54-203ENST00000409558 SLCO1A2P46721 670 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 TPCN2Q8NHX9 752 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 LARSQ9P2J5 1176 aaKnown RBP14.52□□□□□ -0.08
VPS54-203ENST00000409558 PLAAQ9Y263 795 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 RRP15Q9Y3B9 282 aaKnown RBP14.52□□□□□ -0.08
VPS54-203ENST00000409558 MYH4Q9Y623 1939 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 FTLP02792 175 aaPredicted RBP14.52□□□□□ -0.08
VPS54-203ENST00000409558 KCNJ1P48048 391 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 ERVK-9P63128 1117 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 BAATQ14032 418 aaPredicted RBP14.52□□□□□ -0.08
VPS54-203ENST00000409558 NBPF12Q5TAG4 269 aaPredicted RBP14.52□□□□□ -0.08
VPS54-203ENST00000409558 PASD1Q8IV76 773 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 MMGT1Q8N4V1 131 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 AENQ8WTP8 325 aaKnown RBP14.52□□□□□ -0.08
VPS54-203ENST00000409558 CAPS2Q9BXY5 557 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 SIX2Q9NPC8 291 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 AIPL1Q9NZN9 384 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 AMFRQ9UKV5 643 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 SCN9AQ15858 1988 aa14.52□□□□□ -0.08
VPS54-203ENST00000409558 DLEC1Q9Y238 1755 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 SOX5P35711 763 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 HMGCS2P54868 508 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 IFFO1Q0D2I5 559 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 TTMPQ5BVD1 217 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 HAUS6Q7Z4H7 955 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 RPUSD2Q8IZ73 545 aaKnown RBP14.52□□□□□ -0.09
VPS54-203ENST00000409558 USP38Q8NB14 1042 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 HERC5Q9UII4 1024 aaKnown RBP14.52□□□□□ -0.09
VPS54-203ENST00000409558 SNX24Q9Y343 169 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 F8VZ95 297 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 CTNNA1P35221 906 aaKnown RBP14.52□□□□□ -0.09
VPS54-203ENST00000409558 PAK2Q13177 524 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 PPP4R3CPQ6ZMV5 832 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 DAW1Q8N136 415 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 GOLGA5Q8TBA6 731 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 MXRA8Q9BRK3 442 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 NEUROG2Q9H2A3 272 aa14.52□□□□□ -0.09
VPS54-203ENST00000409558 MYO1CO00159 1063 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 YWHABP31946 246 aaKnown RBP14.51□□□□□ -0.09
VPS54-203ENST00000409558 PLTPP55058 493 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 TAB3Q8N5C8 712 aaPredicted RBP14.51□□□□□ -0.09
VPS54-203ENST00000409558 RNF10Q8N5U6 811 aaKnown RBP14.51□□□□□ -0.09
VPS54-203ENST00000409558 FLAD1Q8NFF5 587 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 CEP170P1Q96L14 293 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 PPP1R16BQ96T49 567 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 SGPL1O95470 568 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 BFSP1Q12934 665 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 CRYGNQ8WXF5 182 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 POLR3CQ9BUI4 534 aaPredicted RBP14.51□□□□□ -0.09
VPS54-203ENST00000409558 RPAP3Q9H6T3 665 aaPredicted RBP14.51□□□□□ -0.09
VPS54-203ENST00000409558 EHMT1Q9H9B1 1298 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 TARSL2A2RTX5 802 aaKnown RBP14.51□□□□□ -0.09
VPS54-203ENST00000409558 SPOPO43791 374 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 LIG3P49916 1009 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 MTERF2Q49AM1 385 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 COBLL1Q53SF7 1204 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 POMGNT1Q8WZA1 660 aa14.51□□□□□ -0.09
VPS54-203ENST00000409558 GOLGA6L10A6NI86 522 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 TBX3O15119 743 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 ASNSP08243 561 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 TUBB4BP68371 445 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 STYK1Q6J9G0 422 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 SWSAP1Q6NVH7 229 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 KRT35Q92764 455 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 GABBR1Q9UBS5 961 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 ZMYM2Q9UBW7 1377 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 PGRMC1O00264 195 aaKnown RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 TMOD1P28289 359 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 VAMP7P51809 220 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 MRPS9P82933 396 aaKnown RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 BIRC3Q13489 604 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 RNF187Q5TA31 235 aaPredicted RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 STXBP4Q6ZWJ1 553 aa14.5□□□□□ -0.09
VPS54-203ENST00000409558 EPM2AIP1Q7L775 607 aaPredicted RBP14.5□□□□□ -0.09
VPS54-203ENST00000409558 SLC47A2Q86VL8 602 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms