RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TUT1Q9H6E5 874 aaKnown RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 PRDM9Q9NQV7 894 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 TFIP11Q9UBB9 837 aaKnown RBP10.31□□□□□ -0.76
VPS53-203ENST00000401468 MYH11P35749 1972 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 IGSF9BQ9UPX0 1349 aa10.31□□□□□ -0.76
VPS53-203ENST00000401468 C17orf102A2RUQ5 167 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 WDR64B1ANS9 1081 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 EML1O00423 815 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 SPTLC2O15270 562 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 SLC26A4O43511 780 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 UPP2O95045 317 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 ACTN1P12814 892 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 CD46P15529 392 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 MUTP22033 750 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 LONP1P36776 959 aaKnown RBP10.3□□□□□ -0.76
VPS53-203ENST00000401468 KCNJ6P48051 423 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 ACTR2P61160 394 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 PTPN11Q06124 597 aaPredicted RBP10.3□□□□□ -0.76
VPS53-203ENST00000401468 SKIV2LQ15477 1246 aaKnown RBP10.3□□□□□ -0.76
VPS53-203ENST00000401468 HYIQ5T013 277 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 BRICD5Q6PL45 260 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 DTHD1Q6ZMT9 781 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 RNF19BQ6ZMZ0 732 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 TRMT1LQ7Z2T5 733 aaKnown RBP10.3□□□□□ -0.76
VPS53-203ENST00000401468 TRAPPC12Q8WVT3 735 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 SEPT1Q8WYJ6 367 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 CHAMP1Q96JM3 812 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 NECAB3Q96P71 396 aaPredicted RBP10.3□□□□□ -0.76
VPS53-203ENST00000401468 PCYT2Q99447 389 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 HSD17B14Q9BPX1 270 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 MMTAG2Q9BU76 263 aaKnown RBP10.3□□□□□ -0.76
VPS53-203ENST00000401468 PCDHA11Q9Y5I1 949 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 PCDHA10Q9Y5I2 948 aa10.3□□□□□ -0.76
VPS53-203ENST00000401468 GDF9O60383 454 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 CUTAO60888 179 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 LYPLA2O95372 231 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 SPATA31C1P0DKV0 1188 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 TCF7P36402 384 aaPredicted RBP10.29□□□□□ -0.76
VPS53-203ENST00000401468 TECP42680 631 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 TXKP42681 527 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 SLC26A2P50443 739 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 TAP1Q03518 808 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 GRIN1Q05586 938 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 TMEM62Q0P6H9 643 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 EPHA7Q15375 998 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 TMEM266Q2M3C6 531 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 PLPPR4Q7Z2D5 763 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 SESTD1Q86VW0 696 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 CCDC60Q8IWA6 550 aaPredicted RBP10.29□□□□□ -0.76
VPS53-203ENST00000401468 KCTD17Q8N5Z5 321 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 CCDC155Q8N6L0 562 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 KRI1Q8N9T8 703 aaKnown RBP10.29□□□□□ -0.76
VPS53-203ENST00000401468 NEK9Q8TD19 979 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 LMBR1Q8WVP7 490 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 POLR3CQ9BUI4 534 aaPredicted RBP10.29□□□□□ -0.76
VPS53-203ENST00000401468 KATNAL1Q9BW62 490 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 RAB34Q9BZG1 259 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 DISC1Q9NRI5 854 aa10.29□□□□□ -0.76
VPS53-203ENST00000401468 MAFBQ9Y5Q3 323 aaPredicted RBP10.29□□□□□ -0.76
VPS53-203ENST00000401468 FAM237AA0A1B0GTK4 181 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 FAM187AA6NFU0 413 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 DGAT1O75907 488 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 STBD1O95210 358 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 RPA1P27694 616 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 MARCKSP29966 332 aaPredicted RBP10.28□□□□□ -0.76
VPS53-203ENST00000401468 HOXC8P31273 242 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 RPIAP49247 311 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 KCNQ1P51787 676 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 CEBPZQ03701 1054 aaKnown RBP10.28□□□□□ -0.76
VPS53-203ENST00000401468 FOXC1Q12948 553 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 PTK7Q13308 1070 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 STK38Q15208 465 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 ADALQ6DHV7 355 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 SERINC5Q86VE9 423 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 MYOCDQ8IZQ8 938 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 DBF4BQ8NFT6 615 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 CAGE1Q8TC20 777 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 PPP1R16BQ96T49 567 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 SEZ6LQ9BYH1 1024 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 CCSER1Q9C0I3 900 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 FAM49AQ9H0Q0 323 aaPredicted RBP10.28□□□□□ -0.76
VPS53-203ENST00000401468 PCDHA7Q9UN72 937 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 COL4A6Q14031 1691 aa10.28□□□□□ -0.76
VPS53-203ENST00000401468 A0A1W2PQ27 194 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 A0A1W2PQ64 194 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 A0A1W2PQD8 194 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 VWA3AA6NCI4 1184 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 RSPH10B2B2RC85 870 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 ZNF862O60290 1169 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 SLITRK3O94933 977 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 P4HBP07237 508 aaKnown RBP10.27□□□□□ -0.77
VPS53-203ENST00000401468 PSAPP07602 524 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 RSPH10BP0C881 870 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 ATP4AP20648 1035 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 RFC2P35250 354 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 GRB10Q13322 594 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 FOXD4L6Q3SYB3 417 aaPredicted RBP10.27□□□□□ -0.77
VPS53-203ENST00000401468 RESP18Q5W5W9 173 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 ZNF787Q6DD87 383 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 MIS18BP1Q6P0N0 1132 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms