RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 PDLIM7Q9NR12 457 aa12.87□□□□□ -0.35
SKA3-203ENST00000400018 SMTNL1A8MU46 457 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 AKAP3O75969 853 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 LYPLA2O95372 231 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 PLS3P13797 630 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 GUCY2CP25092 1073 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ERCC5P28715 1186 aaPredicted RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 WNT7BP56706 349 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ADAM9Q13443 819 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 TARBP2Q15633 366 aaKnown RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 FSCN1Q16658 493 aaKnown RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 KIZQ2M2Z5 673 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 IQSEC1Q6DN90 963 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 LRRC55Q6ZSA7 311 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ZBTB33Q86T24 672 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 NEK9Q8TD19 979 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ATP8B4Q8TF62 1192 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 LMBR1Q8WVP7 490 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 WNT8BQ93098 351 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 VTI1AQ96AJ9 217 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 DHX33Q9H6R0 707 aaKnown RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 RBM47A0AV96 593 aaKnown RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 IKBKBO14920 756 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 INHAP05111 366 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 TRIM49P0CI25 452 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 TRIM49CP0CI26 452 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 HSPA6P17066 643 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ADKP55263 362 aaKnown RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 DLG4P78352 724 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 KNOP1Q1ED39 458 aaKnown RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 TCP11X2Q5H9J9 407 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 CDKAL1Q5VV42 579 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 SLC39A4Q6P5W5 647 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 EPM2AIP1Q7L775 607 aaPredicted RBP12.86□□□□□ -0.35
SKA3-203ENST00000400018 TMEM161BQ8NDZ6 487 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 BPIFA3Q9BQP9 254 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 HAPLN2Q9GZV7 340 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 SMARCAD1Q9H4L7 1026 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ANKEF1Q9NU02 776 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ERAP1Q9NZ08 941 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 ANKFY1Q9P2R3 1169 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 HDAC6Q9UBN7 1215 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 AKT3Q9Y243 479 aa12.86□□□□□ -0.35
SKA3-203ENST00000400018 KAT6AQ92794 2004 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 LGR5O75473 907 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 ZNF131P52739 623 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 SPAG1Q07617 926 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 PPFIA1Q13136 1202 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 STIM1Q13586 685 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 DGKDQ16760 1214 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 ZCWPW2Q504Y3 356 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 DCAF17Q5H9S7 520 aaPredicted RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 TEX2Q8IWB9 1127 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 GUF1Q8N442 669 aaKnown RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 TARS2Q9BW92 718 aaKnown RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 NRBP2Q9NSY0 501 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 DACH1Q9UI36 760 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 FAM184BQ9ULE4 1060 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 ARID2Q68CP9 1835 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 A0A087WZ62 844 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 DGAT1O75907 488 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 CTSHP09668 335 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 ADSSP30520 456 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 MTIF2P46199 727 aaKnown RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 CDR1P51861 262 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 GRIK4Q16099 956 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 TCERG1LQ5VWI1 586 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 CEP120Q8N960 986 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 BICD1Q96G01 975 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 CPB2Q96IY4 423 aa12.85□□□□□ -0.35
SKA3-203ENST00000400018 FDXACB1Q9BRP7 624 aaPredicted RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 LARSQ9P2J5 1176 aaKnown RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 SUCLA2Q9P2R7 463 aaPredicted RBP12.85□□□□□ -0.35
SKA3-203ENST00000400018 N4BP3O15049 544 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 EPHB6O15197 1021 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 FKTNO75072 461 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 MYL1P05976 194 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 SMIM10L2AP0DMW4 78 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 SMIM10L2BP0DMW5 78 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 AKR1A1P14550 325 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 LAMTOR4Q0VGL1 99 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 DMP1Q13316 513 aaPredicted RBP12.84□□□□□ -0.35
SKA3-203ENST00000400018 KCNA10Q16322 511 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 MFSD14CQ5VZR4 134 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 AFAP1L1Q8TED9 768 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 CXCL16Q9H2A7 254 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 XPNPEP3Q9NQH7 507 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 TOPORSQ9NS56 1045 aaPredicted RBP12.84□□□□□ -0.35
SKA3-203ENST00000400018 SZT2Q5T011 3432 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 PPFIA4O75335 1185 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 C22orf31O95567 290 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 ASGR1P07306 291 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 ACOT2P49753 483 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 KCNV1Q6PIU1 500 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 RDM1Q8NG50 284 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 DNAJB3Q8WWF6 145 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 TUBGCP2Q9BSJ2 902 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 AP5M1Q9H0R1 490 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 UNC80Q8N2C7 3258 aa12.84□□□□□ -0.35
SKA3-203ENST00000400018 A6NJR5 290 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms