RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 INTS2Q9H0H0 1204 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 VCPKMTQ9H867 229 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 PPARGC1AQ9UBK2 798 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 CEP170BQ9Y4F5 1589 aaPredicted RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 A0A087X0T9 212 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 GOLGA8IPA6NC78 632 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 GOLGA8JA6NMD2 632 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 CDH16O75309 829 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 TMEM191BP0C7N4 346 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 FAM228BP0C875 321 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 CYP19A1P11511 503 aaPredicted RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 ACTN1P12814 892 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 DOK7Q18PE1 504 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 EDRF1Q3B7T1 1238 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 RINT1Q6NUQ1 792 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 TRMT10CQ7L0Y3 403 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 SUGP1Q8IWZ8 645 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 SLC35G2Q8TBE7 412 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 NLRP7Q8WX94 980 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 SNF8Q96H20 258 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 GOLPH3Q9H4A6 298 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 NOD2Q9HC29 1040 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 SEL1LQ9UBV2 794 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 SCINQ9Y6U3 715 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 GOLGA8SH3BPF8 625 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 HOXA13P31271 388 aaPredicted RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 RFC1P35251 1148 aaPredicted RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 SLC12A2P55011 1212 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 FAM98CQ17RN3 349 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 ARHGEF16Q5VV41 709 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 ATG16L1Q676U5 607 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 CELF4Q9BZC1 486 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 GINM1Q9NU53 330 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 ANKFY1Q9P2R3 1169 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 CCPG1Q9ULG6 757 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 TRIM49P0CI25 452 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 TRIM49CP0CI26 452 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 ASPHQ12797 758 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 SYDE2Q5VT97 1194 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 JAMLQ86YT9 394 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 NSUN4Q96CB9 384 aaKnown RBP11.84□□□□□ -0.51
HPS4-202ENST00000398145 CALN1Q9BXU9 219 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 ADAM22Q9P0K1 906 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 FAM237AA0A1B0GTK4 181 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 NOP56O00567 594 aaKnown RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 KRT37O76014 449 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 TNNC2P02585 160 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 SLC9A1P19634 815 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 ARL4CP56559 192 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 STAT4Q14765 748 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 PDXDC2PQ6P474 469 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 MDM1Q8TC05 714 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 C1orf54Q8WWF1 131 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 CCT6BQ92526 530 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 CELF1Q92879 486 aaKnown RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 ATP6V0A1Q93050 837 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 KBTBD4Q9NVX7 518 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 TACC3Q9Y6A5 838 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 ABCB11O95342 1321 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 DLGAP5Q15398 846 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 RBM41Q96IZ5 413 aaKnown RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 INTS13Q9NVM9 706 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 SENP1Q9P0U3 644 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 ARHGAP20Q9P2F6 1191 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 SUCLA2Q9P2R7 463 aaPredicted RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 DBR1Q9UK59 544 aaKnown RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 PABPN1LA6NDY0 278 aaKnown RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 LRRC10BA6NIK2 292 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 PHF2O75151 1096 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 SPAG7O75391 227 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 CRCPO75575 148 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 CPP00450 1065 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 ALDH1B1P30837 517 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 POLGP54098 1239 aaPredicted RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 TMPRSS15P98073 1019 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 PDE1CQ14123 709 aaPredicted RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 SLC29A2Q14542 456 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 GRAMD1BQ3KR37 738 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 SBK1Q52WX2 424 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 METTL13Q8N6R0 699 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 RAPGEF5Q92565 580 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 STK33Q9BYT3 514 aa11.83□□□□□ -0.52
HPS4-202ENST00000398145 TTC7AQ9ULT0 858 aaPredicted RBP11.83□□□□□ -0.52
HPS4-202ENST00000398145 MYOM1P52179 1685 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 USP17L10C9JJH3 530 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 GLI1P08151 1106 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 GARSP41250 739 aaKnown RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 KRT17Q04695 432 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 CRYMQ14894 314 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.82□□□□□ -0.52
HPS4-202ENST00000398145 AGGF1Q8N302 714 aaeCLIP11.82□□□□□ -0.52
HPS4-202ENST00000398145 NSMCE1Q8WV22 266 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 CCDC97Q96F63 343 aaPredicted RBP11.82□□□□□ -0.52
HPS4-202ENST00000398145 TMBIM4Q9HC24 238 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 PIK3C2BO00750 1634 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 SPECC1L-ADORA2AF8WAN1 911 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 STAT3P40763 770 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 ARFIP2P53365 341 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 CRLF3Q8IUI8 442 aa11.82□□□□□ -0.52
HPS4-202ENST00000398145 WDR75Q8IWA0 830 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms