RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 C7orf31Q8N865 590 aa23.34■■□□□ 1.33
CPNE1-204ENST00000397443 PSPC1Q8WXF1 523 aaKnown RBP23.34■■□□□ 1.33
CPNE1-204ENST00000397443 HDAC6Q9UBN7 1215 aa23.34■■□□□ 1.33
CPNE1-204ENST00000397443 PCDHB13Q9Y5F0 798 aa23.34■■□□□ 1.33
CPNE1-204ENST00000397443 BICDL2A1A5D9 508 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 SRGAP2CP0DJJ0 459 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 DNM2P50570 870 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 NCKAP1LP55160 1127 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 TPM4P67936 248 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 HIC1Q14526 733 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 IER5Q5VY09 327 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 CENPPQ6IPU0 288 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 TTI2Q6NXR4 508 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 STXBP4Q6ZWJ1 553 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 ZNF507Q8TCN5 953 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 TCP11Q8WWU5 503 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 VTI1AQ96AJ9 217 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 HSD3B7Q9H2F3 369 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 C17orf75Q9HAS0 396 aa23.33■■□□□ 1.33
CPNE1-204ENST00000397443 MAGEB2O15479 319 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 ATP1A3P13637 1013 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 LAMTOR4Q0VGL1 99 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 CAPSQ13938 189 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 KNOP1Q1ED39 458 aaKnown RBP23.33■■□□□ 1.32
CPNE1-204ENST00000397443 NBPF20Q3BBV1 942 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 FAM47CQ5HY64 1035 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 NFRKBQ6P4R8 1299 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 TMEM161BQ8NDZ6 487 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 NLRP4Q96MN2 994 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 KCTD10Q9H3F6 313 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 AKT3Q9Y243 479 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 NRCAMQ92823 1304 aa23.33■■□□□ 1.32
CPNE1-204ENST00000397443 TRIP12Q14669 1992 aaPredicted RBP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 DENND3A2RUS2 1198 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 RRN3P2A6NIE6 340 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 EIF3DO15371 548 aaKnown RBP eCLIP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 GAS2O43903 313 aaKnown RBP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 RTP1P59025 263 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 UVSSAQ2YD98 709 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 CTU1Q7Z7A3 348 aaKnown RBP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 SYCP3Q8IZU3 236 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 CSGALNACT2Q8N6G5 542 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 PCSK9Q8NBP7 692 aaKnown RBP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 DEPTORQ8TB45 409 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 SPIRE2Q8WWL2 714 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 TSG101Q99816 390 aa23.32■■□□□ 1.32
CPNE1-204ENST00000397443 DUSP9Q99956 384 aaKnown RBP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 FAM49AQ9H0Q0 323 aaPredicted RBP23.32■■□□□ 1.32
CPNE1-204ENST00000397443 AP5Z1O43299 807 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 VTNP04004 478 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 NKX3-2P78367 333 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 PPP2R5AQ15172 486 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 CCSAPQ6IQ19 270 aaPredicted RBP23.31■■□□□ 1.32
CPNE1-204ENST00000397443 SRRTQ9BXP5 876 aaKnown RBP23.31■■□□□ 1.32
CPNE1-204ENST00000397443 RNF208Q9H0X6 261 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 C17orf102A2RUQ5 167 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 PPP1R37O75864 691 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 MAPTP10636 758 aaKnown RBP23.31■■□□□ 1.32
CPNE1-204ENST00000397443 CDK11BP21127 795 aaKnown RBP23.31■■□□□ 1.32
CPNE1-204ENST00000397443 TMOD1P28289 359 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 CST5P28325 142 aaPredicted RBP23.31■■□□□ 1.32
CPNE1-204ENST00000397443 NAMPTP43490 491 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 CTCFP49711 727 aaPredicted RBP23.31■■□□□ 1.32
CPNE1-204ENST00000397443 BMT2Q1RMZ1 405 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 RNF149Q8NC42 400 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 DEFB118Q96PH6 123 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 ZMYM2Q9UBW7 1377 aa23.31■■□□□ 1.32
CPNE1-204ENST00000397443 TREHO43280 583 aa23.3■■□□□ 1.32
CPNE1-204ENST00000397443 CCL5P13501 91 aa23.3■■□□□ 1.32
CPNE1-204ENST00000397443 MXD4Q14582 209 aaPredicted RBP23.3■■□□□ 1.32
CPNE1-204ENST00000397443 NTPCRQ9BSD7 190 aaKnown RBP23.3■■□□□ 1.32
CPNE1-204ENST00000397443 STRA6Q9BX79 667 aa23.3■■□□□ 1.32
CPNE1-204ENST00000397443 USP20Q9Y2K6 914 aa23.3■■□□□ 1.32
CPNE1-204ENST00000397443 SCN10AQ9Y5Y9 1956 aa23.3■■□□□ 1.32
CPNE1-204ENST00000397443 CLIC2O15247 247 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 ACLYP53396 1101 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 GTF2BQ00403 316 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 TMEM62Q0P6H9 643 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 RUFY4Q6ZNE9 571 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 ACCSQ96QU6 501 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 TBX20Q9UMR3 447 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 TISP43B9A030 160 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 CYP2C9P11712 490 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 LRRC63Q05C16 580 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 ALCAMQ13740 583 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 ZCWPW2Q504Y3 356 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 SLC17A8Q8NDX2 589 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 MAP7D2Q96T17 732 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 ARHGAP28Q9P2N2 729 aa23.29■■□□□ 1.32
CPNE1-204ENST00000397443 FRMPD3Q5JV73 1810 aa23.28■■□□□ 1.32
CPNE1-204ENST00000397443 UBE4BO95155 1302 aa23.28■■□□□ 1.32
CPNE1-204ENST00000397443 LINC01465Q8N7H1 131 aa23.28■■□□□ 1.32
CPNE1-204ENST00000397443 SCLT1Q96NL6 688 aa23.28■■□□□ 1.32
CPNE1-204ENST00000397443 ST6GALNAC4Q9H4F1 302 aa23.28■■□□□ 1.32
CPNE1-204ENST00000397443 TYW1Q9NV66 732 aaKnown RBP23.28■■□□□ 1.32
CPNE1-204ENST00000397443 GINS2Q9Y248 185 aa23.28■■□□□ 1.32
CPNE1-204ENST00000397443 TGFB1I1O43294 461 aa23.27■■□□□ 1.32
CPNE1-204ENST00000397443 TAS1R3Q7RTX0 852 aa23.27■■□□□ 1.32
CPNE1-204ENST00000397443 KIAA0319LQ8IZA0 1049 aa23.27■■□□□ 1.32
CPNE1-204ENST00000397443 GBP3Q9H0R5 595 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms