RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ZBTB24O43167 697 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 TEX33O43247 280 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 PRR29P0C7W0 189 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 PEX3P56589 373 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 COASYQ13057 564 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 CEP55Q53EZ4 464 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ZBTB33Q86T24 672 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 FBXL13Q8NEE6 735 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 HEXIM2Q96MH2 286 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 DDX47Q9H0S4 455 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 NGRNQ9NPE2 291 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 BSDC1Q9NW68 430 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 NCAPD2Q15021 1401 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ENO4A6NNW6 628 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 APOA1P02647 267 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 SLC12A1Q13621 1099 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ARL13BQ3SXY8 428 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 TEDDM1Q5T9Z0 273 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 CYB5R4Q7L1T6 521 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.93□□□□□ -0.665e-6■■■■□ 19.4
LIMCH1-203ENST00000396595 FAM20AQ96MK3 541 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 OSBPL1AQ9BXW6 950 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 PFASO15067 1338 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ATP8B3O60423 1300 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 GGPS1O95749 300 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 CALB1P05937 261 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 RFX1P22670 979 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ZNF667Q5HYK9 610 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 DCAF4Q8WV16 495 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 THOC1Q96FV9 657 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 FAM167BQ9BTA0 163 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 LY9Q9HBG7 655 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 EFCAB6Q5THR3 1501 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 TPD52L2O43399 206 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 JAK3P52333 1124 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 TSPY1Q01534 308 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 MKRN3Q13064 507 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 DRP2Q13474 957 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ACAD11Q709F0 780 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 TRMT10CQ7L0Y3 403 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 SH3GL1Q99961 368 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 SUN2Q9UH99 717 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 ESYT3A0FGR9 886 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 POTEMA6NI47 508 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 NBNO60934 754 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 TSTA3Q13630 321 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 KNOP1Q1ED39 458 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 C1orf146Q5VVC0 180 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 SULF1Q8IWU6 871 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 HIPK4Q8NE63 616 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 MCPH1Q8NEM0 835 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 VIPAS39Q9H9C1 493 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 SEL1LQ9UBV2 794 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 STRIP2Q9ULQ0 834 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 CAPN11Q9UMQ6 739 aa10.93□□□□□ -0.66
LIMCH1-203ENST00000396595 XPAP23025 273 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 DHX34Q14147 1143 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 TSGA10IPQ3SY00 556 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 SCARA5Q6ZMJ2 495 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 TMEM179Q6ZVK1 233 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 PARP9Q8IXQ6 854 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 CYP26B1Q9NR63 512 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 MAGED2Q9UNF1 606 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 ZFYVE16Q7Z3T8 1539 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 ZBTB5O15062 677 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 HP1BP3Q5SSJ5 553 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 RINLQ6ZS11 566 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 SPATA4Q8NEY3 305 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 ZNF564Q8TBZ8 553 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 OXER1Q8TDS5 423 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 HSPH1Q92598 858 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 WNT8AQ9H1J5 351 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 GEMIN8Q9NWZ8 242 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 NCK2O43639 380 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 SERPINB2P05120 415 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 KRT4P19013 534 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 PAMP19021 973 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 TGS1Q96RS0 853 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 HEMGNQ9BXL5 484 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 ETNK1Q9HBU6 452 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 HDAC6Q9UBN7 1215 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 NBPF26B4DH59 902 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 HOXA13P31271 388 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 ARFIP2P53365 341 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 SHC4Q6S5L8 630 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 NBPF15Q8N660 670 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 TMEM47Q9BQJ4 181 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 PCDHA6Q9UN73 950 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 TRIM33Q9UPN9 1127 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 PCDHA8Q9Y5H6 950 aa10.92□□□□□ -0.66
LIMCH1-203ENST00000396595 SFI1A8K8P3 1242 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 IGKV5-2P06315 115 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PAPOLAP51003 745 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PRELPP51888 382 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 KCNB1Q14721 858 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 RFFLQ8WZ73 363 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 WDR70Q9NW82 654 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ASNSD1Q9NWL6 643 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 NOC2LQ9Y3T9 749 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms