RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SCN9AQ15858 1988 aa22.38■■□□□ 1.17
CLK3-202ENST00000395066 LOC102724159A0A0B4J2E5 919 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 ACTN3Q08043 901 aaPredicted RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 PWP2Q15269 919 aaKnown RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 ZYXQ15942 572 aaKnown RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 RASGEF1CQ8N431 466 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 CALR3Q96L12 384 aaKnown RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 TMOD4Q9NZQ9 345 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 NPR1P16066 1061 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 TBC1D10BQ4KMP7 808 aaPredicted RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 TRMT1LQ7Z2T5 733 aaKnown RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 GMCL1P1Q8NEA9 526 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 ACER1Q8TDN7 264 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 HOOK2Q96ED9 719 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 GMCL1Q96IK5 515 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 CNOT8Q9UFF9 292 aaKnown RBP22.37■■□□□ 1.17
CLK3-202ENST00000395066 COG5Q9UP83 839 aa22.37■■□□□ 1.17
CLK3-202ENST00000395066 MMP14P50281 582 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 DHX9Q08211 1270 aaKnown RBP22.36■■□□□ 1.17
CLK3-202ENST00000395066 MSL1Q68DK7 614 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 FAM178BQ8IXR5 827 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 SLC20A1Q8WUM9 679 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 GLG1Q92896 1179 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 CYFIP2Q96F07 1278 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 SH2D3AQ9BRG2 576 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 INTS2Q9H0H0 1204 aaKnown RBP22.36■■□□□ 1.17
CLK3-202ENST00000395066 AGPAT3Q9NRZ7 376 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 DLG4P78352 724 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 DACT2Q5SW24 774 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 ODR4Q5SWX8 454 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 C6orf89Q6UWU4 347 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 LMBR1Q8WVP7 490 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 LRRC45Q96CN5 670 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 IDI2Q9BXS1 227 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 STK33Q9BYT3 514 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 PCIF1Q9H4Z3 704 aa22.36■■□□□ 1.17
CLK3-202ENST00000395066 DDX3YO15523 660 aaKnown RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 PSMD10O75832 226 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 PLCB4Q15147 1175 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 ODF2Q5BJF6 829 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 MEX3CQ5U5Q3 659 aaKnown RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 PHLDB3Q6NSJ2 640 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 ZNF720Q7Z2F6 126 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 TMC3Q7Z5M5 1100 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 CCDC13Q8IYE1 715 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 NOVA2Q9UNW9 492 aaKnown RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 A0A0A6YYK5 440 aaPredicted RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 GTPBP10A4D1E9 387 aaKnown RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 BHMG1C9JSJ3 638 aaPredicted RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 ECE2O60344 883 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 ARP10275 920 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 GAP43P17677 238 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 MAP2K2P36507 400 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 RBM26Q5T8P6 1007 aaKnown RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 CHADLQ6NUI6 762 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 SYCE1Q8N0S2 351 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 CTNNBL1Q8WYA6 563 aaPredicted RBP22.35■■□□□ 1.17
CLK3-202ENST00000395066 ATP8A1Q9Y2Q0 1164 aa22.35■■□□□ 1.17
CLK3-202ENST00000395066 TMEM110-MUSTN1A8MSY1 372 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 CCDC188H7C350 402 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 FOXN3O00409 490 aaPredicted RBP22.34■■□□□ 1.17
CLK3-202ENST00000395066 PPP1R12BO60237 982 aaPredicted RBP22.34■■□□□ 1.17
CLK3-202ENST00000395066 GAS7O60861 476 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 ZNF746Q6NUN9 644 aaPredicted RBP22.34■■□□□ 1.17
CLK3-202ENST00000395066 ZSWIM2Q8NEG5 633 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 RFFLQ8WZ73 363 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 ALG3Q92685 438 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 CSRNP1Q96S65 589 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 MYL7Q01449 175 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 PODNQ7Z5L7 613 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 UNC45AQ9H3U1 944 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 A1CFQ9NQ94 594 aaKnown RBP22.34■■□□□ 1.17
CLK3-202ENST00000395066 SLC12A6Q9UHW9 1150 aa22.34■■□□□ 1.17
CLK3-202ENST00000395066 GMNCA6NCL1 334 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 EIF3DO15371 548 aaKnown RBP eCLIP22.33■■□□□ 1.17
CLK3-202ENST00000395066 CYP3A4P08684 503 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 MARCKSL1P49006 195 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 SMTNP53814 917 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 PPATQ06203 517 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 DRP2Q13474 957 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 HS2ST1Q7LGA3 356 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 ATP8B4Q8TF62 1192 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 SYT11Q9BT88 431 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 FRMD4BQ9Y2L6 1034 aa22.33■■□□□ 1.17
CLK3-202ENST00000395066 EXOC3O60645 756 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 LMNB1P20700 586 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 TNFAIP3P21580 790 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 STAT2P52630 851 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 POU5F1Q01860 360 aaKnown RBP22.33■■□□□ 1.16
CLK3-202ENST00000395066 BIRC3Q13489 604 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 UBAP2Q5T6F2 1119 aaKnown RBP22.33■■□□□ 1.16
CLK3-202ENST00000395066 RUFY4Q6ZNE9 571 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 PRMT6Q96LA8 375 aaPredicted RBP22.33■■□□□ 1.16
CLK3-202ENST00000395066 JPH2Q9BR39 696 aaPredicted RBP22.33■■□□□ 1.16
CLK3-202ENST00000395066 ACP6Q9NPH0 428 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 APEX2Q9UBZ4 518 aa22.33■■□□□ 1.16
CLK3-202ENST00000395066 UTP11Q9Y3A2 253 aaKnown RBP22.33■■□□□ 1.16
CLK3-202ENST00000395066 MAGOHP61326 146 aaKnown RBP22.32■■□□□ 1.16
CLK3-202ENST00000395066 QPCTQ16769 361 aa22.32■■□□□ 1.16
CLK3-202ENST00000395066 CCDC121Q6ZUS5 278 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms