RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PHOSPHO2Q8TCD6 241 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 GLG1Q92896 1179 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 GSDMAQ96QA5 445 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 IL23AQ9NPF7 189 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 TRMT13Q9NUP7 481 aaKnown RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 PCNTO95613 3336 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 ADGRA3Q8IWK6 1321 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 DDX11L8A8MPP1 907 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 AMPD3Q01432 767 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 ZCWPW2Q504Y3 356 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 PLA2G4FQ68DD2 849 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 CNKSR3Q6P9H4 555 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 C16orf59Q7L2K0 433 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF689Q96CS4 500 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 CEP170P1Q96L14 293 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 REEP2Q9BRK0 252 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 FTHL17Q9BXU8 183 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 TRPV6Q9H1D0 765 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 TSPYL2Q9H2G4 693 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 TMX1Q9H3N1 280 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 CLSTN2Q9H4D0 955 aa7.78□□□□□ -1.16
LIMA1-202ENST00000394943 SEPT9Q9UHD8 586 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-202ENST00000394943 KIAA0391O15091 583 aaKnown RBP7.77□□□□□ -1.16
LIMA1-202ENST00000394943 CYP2C9P11712 490 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF200P98182 395 aaPredicted RBP7.77□□□□□ -1.16
LIMA1-202ENST00000394943 TCTN1Q2MV58 587 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 L1TD1Q5T7N2 865 aaKnown RBP7.77□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF720Q7Z2F6 126 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 RSPH3Q86UC2 560 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 GPT2Q8TD30 523 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 FBXL18Q96ME1 805 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 BHMT2Q9H2M3 363 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 AGPAT5Q9NUQ2 364 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 TBC1D7Q9P0N9 293 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 COL4A3BPQ9Y5P4 624 aa7.77□□□□□ -1.16
LIMA1-202ENST00000394943 CHMP2AO43633 222 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 GADD45BO75293 160 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 LINC00271P0C7V0 271 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 TMOD1P28289 359 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 HOXA11P31270 313 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 MCM4P33991 863 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 HOXD13P35453 343 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 PPP1R2P41236 205 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 NPEPPSP55786 919 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 HTRA4P83105 476 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 TBC1D8BQ0IIM8 1120 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 DRP2Q13474 957 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 MCM6Q14566 821 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 UBXN11Q5T124 520 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 ZNF618Q5T7W0 954 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 ALKAL1Q6UXT8 129 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 LINC01599Q8WXQ3 324 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 SLC7A3Q8WY07 619 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 FUCA2Q9BTY2 467 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 DMAC2Q9NW81 257 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 ARHGEF35A5YM69 484 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 HIP1RO75146 1068 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 SYKP43405 635 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 ME1P48163 572 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 CLDN10P78369 228 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 MORC3Q14149 939 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 TFDP1Q14186 410 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 FAM228AQ86W67 206 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 PSPC1Q8WXF1 523 aaKnown RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 DDX12PQ92771 950 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 CHAMP1Q96JM3 812 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 INO80BQ9C086 356 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 C1orf112Q9NSG2 853 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 RNF216Q9NWF9 866 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 PKD2L1Q9P0L9 805 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 SUCLA2Q9P2R7 463 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-202ENST00000394943 USP20Q9Y2K6 914 aa7.77□□□□□ -1.17
LIMA1-202ENST00000394943 A0A1B0GUA9 196 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 MBD3O95983 291 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 STAT6P42226 847 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 MCL1Q07820 350 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 PPIGQ13427 754 aaKnown RBP eCLIP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 XKR9Q5GH70 373 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 GPR153Q6NV75 609 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 PIGOQ8TEQ8 1089 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM40Q8WWA1 233 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 KCTD10Q9H3F6 313 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 RNF19AQ9NV58 838 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 SERTAD1Q9UHV2 236 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TNFSF13BQ9Y275 285 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 CDY2AQ9Y6F7 541 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 ABHD14A-ACY1A0A1B0GW23 586 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 ACKR2O00590 384 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 POLR2DO15514 142 aaKnown RBP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 LIG1P18858 919 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 NPTX2P47972 431 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 CYP4A11Q02928 519 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 KYAT1Q16773 422 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 FSIP1Q8NA03 581 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 SPRYD3Q8NCJ5 442 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 PRPF31Q8WWY3 499 aaKnown RBP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 POLR3FQ9H1D9 316 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 PRMT7Q9NVM4 692 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TRPC6Q9Y210 931 aa7.76□□□□□ -1.17
LIMA1-202ENST00000394943 TRAF3IP3Q9Y228 551 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms