RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CABP7Q86V35 215 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 CCAR2Q8N163 923 aaKnown RBP11.26□□□□□ -0.61
VPS53-202ENST00000389040 CCDC112Q8NEF3 446 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 SLC7A3Q8WY07 619 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 CDK5RAP3Q96JB5 506 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 TRPV6Q9H1D0 765 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 CYP26B1Q9NR63 512 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 KBTBD4Q9NVX7 518 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 RWDD2AQ9UIY3 292 aa11.26□□□□□ -0.61
VPS53-202ENST00000389040 IGKV6-21A0A0C4DH24 114 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 A0A1B0GTH6 734 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 ZBTB42B2RXF5 422 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 MAFO75444 373 aaPredicted RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 MED24O75448 989 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 DGAT1O75907 488 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 TIMP1P01033 207 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 TNNT1P13805 278 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 PLCG1P19174 1290 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 KLRC1P26715 233 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CHMP4BP1P59074 171 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CYP4A11Q02928 519 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CTTNQ14247 550 aaKnown RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 NR1I3Q14994 352 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 SPECC1LQ69YQ0 1117 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 MTHFD1LQ6UB35 978 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CEP170P1Q96L14 293 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CCDC43Q96MW1 224 aaKnown RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 MMTAG2Q9BU76 263 aaKnown RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 TIPINQ9BVW5 301 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 TRMT13Q9NUP7 481 aaKnown RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 SEPT9Q9UHD8 586 aaPredicted RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 KCNG1Q9UIX4 513 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 SQORQ9Y6N5 450 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 DYNC1I1O14576 645 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 RFC2P35250 354 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 RARRES1P49788 294 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 PAK1Q13153 545 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 TBX2Q13207 712 aaPredicted RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 KCNB1Q14721 858 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 PTPN21Q16825 1174 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 IER5Q5VY09 327 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 NYAP1Q6ZVC0 841 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 APTXQ7Z2E3 356 aaKnown RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 LRRC15Q8TF66 581 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 TCP11Q8WWU5 503 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CTAGE1Q96RT6 745 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 CEP89Q96ST8 783 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 PLIN2Q99541 437 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 HIPK3Q9H422 1215 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 DHX33Q9H6R0 707 aaKnown RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 PDLIM7Q9NR12 457 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 WRAP73Q9P2S5 460 aaPredicted RBP11.25□□□□□ -0.61
VPS53-202ENST00000389040 STK17AQ9UEE5 414 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 KIAA1024Q9UPX6 916 aa11.25□□□□□ -0.61
VPS53-202ENST00000389040 MKI67P46013 3256 aaKnown RBP11.24□□□□□ -0.61
VPS53-202ENST00000389040 ASAP2O43150 1006 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 TREHO43280 583 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 C22orf31O95567 290 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 EYA4O95677 639 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 GTF2F1P35269 517 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS53-202ENST00000389040 USP38Q8NB14 1042 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 MCPH1Q8NEM0 835 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 NELFBQ8WX92 580 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 NOC4LQ9BVI4 516 aaKnown RBP11.24□□□□□ -0.61
VPS53-202ENST00000389040 TMX1Q9H3N1 280 aa11.24□□□□□ -0.61
VPS53-202ENST00000389040 KLRC4O43908 158 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 PFKMP08237 780 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 CYP2C9P11712 490 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 RAG1P15918 1043 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 POLGP54098 1239 aaPredicted RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 PTPN14Q15678 1187 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 KMT5BQ4FZB7 885 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 TMEM119Q4V9L6 283 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 XKR9Q5GH70 373 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 FAM26DQ5JW98 314 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 CEP135Q66GS9 1140 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 E4F1Q66K89 784 aaPredicted RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 MFSD5Q6N075 450 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 TMEM199Q8N511 208 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 MAP7D2Q96T17 732 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 LRRC27Q9C0I9 530 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 TRMT1Q9NXH9 659 aaKnown RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 GDAQ9Y2T3 454 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 M0QZ92 97 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 RHOBTB3O94955 611 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 CKBP12277 381 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 SELPP16109 830 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 PRCPP42785 496 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 IGBP1P78318 339 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 POU5F1BQ06416 359 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 HIC1Q14526 733 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 MXD4Q14582 209 aaPredicted RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 TRIM71Q2Q1W2 868 aaKnown RBP11.23□□□□□ -0.61
VPS53-202ENST00000389040 MTERF2Q49AM1 385 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 ODR4Q5SWX8 454 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 EFCAB12Q6NXP0 572 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 POTEGQ6S5H5 508 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 C7orf61Q8IZ16 206 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 KIAA0319LQ8IZA0 1049 aa11.23□□□□□ -0.61
VPS53-202ENST00000389040 LINC01465Q8N7H1 131 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms