RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 GLYCTKQ8IVS8 523 aa15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 PROCA1Q8NCQ7 364 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 AFAP1L1Q8TED9 768 aa15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 PDGFDQ9GZP0 370 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 RBAKQ9NYW8 714 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 HSPBP1Q9NZL4 362 aa15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 PFASO15067 1338 aa15.3■□□□□ 0.04
SHROOM1-203ENST00000378679 SRGAP2O75044 1071 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 MYL3P08590 195 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 MRPS25P82663 173 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 ZNF667Q5HYK9 610 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 RAD9BQ6WBX8 426 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 GPC2Q8N158 579 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 MRPL4Q9BYD3 311 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 RRP15Q9Y3B9 282 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 YDJCA8MPS7 323 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 E7EVH7 732 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 ATP2A2P16615 1042 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 SLC9A1P19634 815 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 KCTD17Q8N5Z5 321 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 NKX2-3Q8TAU0 364 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 FAM149B1Q96BN6 582 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 GPRASP2Q96D09 838 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 WDR24Q96S15 920 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 TIPINQ9BVW5 301 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 MIS12Q9H081 205 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 PGRMC1O00264 195 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 CAPN9O14815 690 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 PALMO75781 387 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 ACOT2P49753 483 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 ACTR2P61160 394 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 TMEM270Q6UE05 265 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 FBXL13Q8NEE6 735 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 TRIM11Q96F44 468 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 C2orf40Q9H1Z8 148 aa15.29■□□□□ 0.04
SHROOM1-203ENST00000378679 GOLGA6CA6NDK9 693 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 NDUFAB1O14561 156 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 TNPO2O14787 897 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 GOLGA6DP0CG33 693 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 KLK7P49862 253 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 GPD1LQ8N335 351 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 GPRC5AQ8NFJ5 357 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 CAMKK2Q96RR4 588 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 FHDC1Q9C0D6 1143 aaPredicted RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 GPRC5CQ9NQ84 441 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 GOLGA6AQ9NYA3 693 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 ITIH6Q6UXX5 1313 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 AFDNP55196 1824 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 WNT7AO00755 349 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 NPM3O75607 178 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 SARSP49591 514 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 ZNF157P51786 506 aaPredicted RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 KRT71Q3SY84 523 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 MICALCLQ6ZW33 695 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 PNMA5Q96PV4 448 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 ADM5C9JUS6 153 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 CELF2O95319 508 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 UCHL3P15374 230 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 C2orf54Q08AI8 447 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 Q4G0T1 1027 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 DNAJC24Q6P3W2 148 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 PPP1R14CQ8TAE6 165 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 SCFD2Q8WU76 684 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 PARD6BQ9BYG5 372 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 MRPL47Q9HD33 250 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 ANKEF1Q9NU02 776 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 ZNF148Q9UQR1 794 aa15.28■□□□□ 0.04
SHROOM1-203ENST00000378679 RGPD5Q99666 1765 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 VWA5AO00534 786 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 DYNC1LI2O43237 492 aaPredicted RBP15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 MYO1EQ12965 1108 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 UAP1Q16222 522 aaPredicted RBP15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 CENPPQ6IPU0 288 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 CCDC89Q8N998 374 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 KIFC3Q9BVG8 833 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 TXNDC16Q9P2K2 825 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 HEXIM1O94992 359 aaKnown RBP15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 PGK2P07205 417 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 FMO5P49326 533 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 BFSP1Q12934 665 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 GIT2Q14161 759 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 MAP1SQ66K74 1059 aaPredicted RBP15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 EPB41L5Q9HCM4 733 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 RNF14Q9UBS8 474 aa15.27■□□□□ 0.04
SHROOM1-203ENST00000378679 ADCY8P40145 1251 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 EFNA5P52803 228 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 EMC2Q15006 297 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 TATDN1Q6P1N9 297 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 RUFY4Q6ZNE9 571 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 SEMA6BQ9H3T3 888 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 SUCLA2Q9P2R7 463 aaPredicted RBP15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 MYO1CO00159 1063 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 SLC16A3O15427 465 aaKnown RBP15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 CETPP11597 493 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 ATP1A2P50993 1020 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 IFRD2Q12894 506 aaPredicted RBP15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 PASD1Q8IV76 773 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 RHOT2Q8IXI1 618 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 SMARCAD1Q9H4L7 1026 aa15.27■□□□□ 0.03
SHROOM1-203ENST00000378679 GPRC5DQ9NZD1 345 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms