RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 GFPT2O94808 682 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 SEC24DO94855 1032 aaPredicted RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ARHGAP17Q68EM7 881 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 DCTN4Q9UJW0 460 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 POLA2Q14181 598 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 BBS7Q8IWZ6 715 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 BBS2Q9BXC9 721 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 WDR11Q9BZH6 1224 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 SNTNA6NMZ2 147 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 INO80B-WBP1J3KQ70 363 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 DLGAP3O95886 979 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 MAGOHP61326 146 aaKnown RBP12.35□□□□□ -0.43
VPS13A-205ENST00000376636 VPS50Q96JG6 964 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 HEXIM2Q96MH2 286 aaKnown RBP12.35□□□□□ -0.43
VPS13A-205ENST00000376636 OLFM1Q99784 485 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 FAM167BQ9BTA0 163 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 INO80BQ9C086 356 aaPredicted RBP12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ADAM21Q9UKJ8 722 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 PCDHA5Q9Y5H7 936 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 RSPH10B2B2RC85 870 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 RSPH10BP0C881 870 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 STX3Q13277 289 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 DLGAP5Q15398 846 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 SH3KBP1Q96B97 665 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 KCNA3P22001 575 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 DIS3LQ8TF46 1054 aaKnown RBP12.35□□□□□ -0.43
VPS13A-205ENST00000376636 TRIM62Q9BVG3 475 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 APOL6Q9BWW8 343 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 DUOX2Q9NRD8 1548 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 NEMP1O14524 444 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 CCNA1P78396 465 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ASPRV1Q53RT3 343 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 SLFN12LQ6IEE8 588 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 FAM89AQ96GI7 184 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 CLCA2Q9UQC9 943 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 FRMPD2Q68DX3 1309 aaPredicted RBP12.35□□□□□ -0.43
VPS13A-205ENST00000376636 hCG_1642624A0A1W2PR95 340 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 SYNDIG1LA6NDD5 238 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 APPL2Q8NEU8 664 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 PAGR1Q9BTK6 254 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF197O14709 1029 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ATXN3P54252 364 aaPredicted RBP12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ARMCX4Q5H9R4 360 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 LRRC49Q8IUZ0 686 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 FANCBQ8NB91 859 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 AIPL1Q9NZN9 384 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 PGM1P36871 562 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 TOGARAM2Q6ZUX3 1019 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 C7orf31Q8N865 590 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 INPP5FQ9Y2H2 1132 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 GRID2IPA4D2P6 1211 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 SOWAHDA6NJG2 315 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ALAS1P13196 640 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 CCND2P30279 289 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 ATP11CQ8NB49 1132 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 MTERF3Q96E29 417 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 AP1M1Q9BXS5 423 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 MXI1P50539 228 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 MFSD14BQ5SR56 506 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 TTC30BQ8N4P2 665 aa12.35□□□□□ -0.43
VPS13A-205ENST00000376636 IQCA1LA6NCM1 817 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 AKAP10O43572 662 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 NCALDP61601 193 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 PSMC6P62333 389 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 POU5F1BQ06416 359 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.34□□□□□ -0.431e-6■□□□□ 10.8
VPS13A-205ENST00000376636 SPDYE5A6NIY4 337 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF827Q17R98 1081 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 SPDYE7PQ495Y7 208 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 CERKLQ49MI3 558 aaPredicted RBP12.34□□□□□ -0.43
VPS13A-205ENST00000376636 PKN3Q6P5Z2 889 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 SNF8Q96H20 258 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 ASNSD1Q9NWL6 643 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 THRAP3Q9Y2W1 955 aaKnown RBP12.34□□□□□ -0.43
VPS13A-205ENST00000376636 KRT17Q04695 432 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 MEI1Q5TIA1 1274 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 PCDHA1Q9Y5I3 950 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 NCKAP1LP55160 1127 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 OTUD7BQ6GQQ9 843 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 POTEEQ6S8J3 1075 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 CCNYL1Q8N7R7 359 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 PCYOX1LQ8NBM8 494 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 ACAP3Q96P50 834 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 MORC2Q9Y6X9 1032 aaPredicted RBP12.34□□□□□ -0.43
VPS13A-205ENST00000376636 TIMM10P62072 90 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 HPCAP84074 193 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 IYDQ6PHW0 289 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 C19orf44Q9H6X5 657 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 RPF1Q9H9Y2 349 aaKnown RBP12.34□□□□□ -0.43
VPS13A-205ENST00000376636 MAD2L2Q9UI95 211 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 SRPK1Q96SB4 655 aaKnown RBP12.34□□□□□ -0.43
VPS13A-205ENST00000376636 CLEC4MQ9H2X3 399 aaPredicted RBP12.34□□□□□ -0.43
VPS13A-205ENST00000376636 APOA4P06727 396 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 KCNA2P16389 499 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 KCNV2Q8TDN2 545 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 KIF24Q5T7B8 1368 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 GCC2Q8IWJ2 1684 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 GGCXP38435 758 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 FAM45BPQ6NSW5 357 aa12.34□□□□□ -0.43
VPS13A-205ENST00000376636 FHDC1Q9C0D6 1143 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms