RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PRIM1P49642 420 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PSEN1P49768 467 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 FASTKD1Q53R41 847 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 C6orf118Q5T5N4 469 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ABHD5Q8WTS1 349 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 DKK3Q9UBP4 350 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ZRANB1Q9UGI0 708 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SEPT3Q9UH03 358 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PALD1Q9ULE6 856 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PHF20L1A8MW92 1017 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ZW10O43264 779 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ACSL4O60488 711 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ULK1O75385 1050 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 FAM200BP0CF97 657 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ARL4AP40617 200 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 MLH1P40692 756 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 KPNA2P52292 529 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 IL2P60568 153 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 OSTNP61366 133 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 VWA3BQ502W6 1294 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 LMBR1LQ6UX01 489 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ARHGEF18Q6ZSZ5 1173 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 DGKHQ86XP1 1220 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CDKL3Q8IVW4 592 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TRIM58Q8NG06 486 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC8CQ8TDW0 803 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 KCTD4Q8WVF5 259 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SKA1Q96BD8 255 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ANKRD36BP1Q96IX9 119 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TCEANC2Q96MN5 208 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 hCG_2014768A0A024R1R8 64 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 MYO1GB0I1T2 1018 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TRIM38O00635 465 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 H2AFYO75367 372 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TCEA3O75764 348 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 KRT38O76015 456 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SYT1P21579 422 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PGBD2Q6P3X8 592 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CAMK1DQ8IU85 385 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 UHMK1Q8TAS1 419 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SAAL1Q96ER3 474 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CABS1Q96KC9 395 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TBATAQ96M53 351 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 RMDN3Q96TC7 470 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SH3GL3Q99963 347 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CDK19Q9BWU1 502 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 BHLHE41Q9C0J9 482 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PSTPIP2Q9H939 334 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SEPT9Q9UHD8 586 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ZNF148Q9UQR1 794 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 LRRIQ3A6PVS8 624 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 F5H423 210 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 KRT75O95678 551 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 HLA-DQA2P01906 255 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 RALBP11234 206 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 MARK3P27448 753 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 HOXC12P31275 282 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 DMP1Q13316 513 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PEG10Q86TG7 708 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 USP7Q93009 1102 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 POLKQ9UBT6 870 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 BTBD3Q9Y2F9 522 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 GNAT3A8MTJ3 354 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PSMD14O00487 310 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 C4BPBP20851 252 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 RASA1P20936 1047 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 S100A1P23297 94 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 MCM5P33992 734 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 BASP1P80723 227 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 LONRF2Q1L5Z9 754 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 AKAP4Q5JQC9 854 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 OLFML2BQ68BL8 750 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 EEPD1Q7L9B9 569 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TTC7BQ86TV6 843 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SDR16C5Q8N3Y7 309 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 DPP10Q8N608 796 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 MAGEB6Q8N7X4 407 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 DHX38Q92620 1227 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 ARL8AQ96BM9 186 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 GINM1Q9NU53 330 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PAG1Q9NWQ8 432 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 FBXO10Q9UK96 956 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PCDHB4Q9Y5E5 795 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC189A1A4V9 331 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ARHGEF37A1IGU5 675 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 WDR91A4D1P6 747 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 VWA3AA6NCI4 1184 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 INO80B-WBP1J3KQ70 363 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 MSL3P1P0C860 447 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 IRF1P10914 325 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 AXLP30530 894 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 NOS2P35228 1153 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 PSEN2P49810 448 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 SERPINH1P50454 418 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 EEF1A2Q05639 463 aaKnown RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 POU5F1BQ06416 359 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 HIST2H2ACQ16777 129 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-202ENST00000375405 GRAMD1BQ3KR37 738 aa4.92□□□□□ -1.62
SCN1A-202ENST00000375405 ZCCHC8Q6NZY4 707 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms