RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 AKR1A1P14550 325 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 CCND2P30279 289 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 ZNF76P36508 570 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 GJA8P48165 433 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 VAV2P52735 878 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 TRAPPC11Q7Z392 1133 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 CACNA2D4Q7Z3S7 1137 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 LENG9Q96B70 501 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 ANKZF1Q9H8Y5 726 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 LRRC53A6NM62 1247 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 MYCNP04198 464 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-202ENST00000374876 PLEKP08567 350 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-202ENST00000374876 SMPD1P17405 629 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 RPA1P27694 616 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 IRX5P78411 483 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-202ENST00000374876 TNFAIP2Q03169 654 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 ARSHQ5FYA8 562 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 MSANTD4Q8NCY6 345 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 SCFD1Q8WVM8 642 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 WDR11Q9BZH6 1224 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 EDEM3Q9BZQ6 932 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 ARHGAP20Q9P2F6 1191 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 SAR1BQ9Y6B6 198 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 FRMPD4Q14CM0 1322 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 FRMD3A2A2Y4 597 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 MEIS1O00470 390 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 USO1O60763 962 aaKnown RBP17.03■□□□□ 0.32
CCDC40-202ENST00000374876 ATP1A1P05023 1023 aaKnown RBP17.03■□□□□ 0.32
CCDC40-202ENST00000374876 CIITAP33076 1130 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 PLA2G4AP47712 749 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 PCNX4Q63HM2 1172 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 IFIH1Q9BYX4 1025 aaKnown RBP17.03■□□□□ 0.32
CCDC40-202ENST00000374876 HDAC6Q9UBN7 1215 aa17.03■□□□□ 0.32
CCDC40-202ENST00000374876 MACROD2A1Z1Q3 448 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 MSH4O15457 936 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 AKR1B10O60218 316 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 ARIH2O95376 493 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 PGK1P00558 417 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 RHOXF2BP0C7M4 288 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 RARBP10826 455 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 EIF4A3P38919 411 aaKnown RBP17.02■□□□□ 0.32
CCDC40-202ENST00000374876 KIF11P52732 1056 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 PAPD7Q5XG87 772 aaKnown RBP17.02■□□□□ 0.32
CCDC40-202ENST00000374876 IQSEC1Q6DN90 963 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 SECISBP2LQ93073 1101 aaKnown RBP17.02■□□□□ 0.32
CCDC40-202ENST00000374876 RHOXF2Q9BQY4 288 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 KCTD10Q9H3F6 313 aa17.02■□□□□ 0.32
CCDC40-202ENST00000374876 LRRC37A2A6NM11 1700 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 ZNF263O14978 683 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 MSCO60682 206 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 SPATA31C1P0DKV0 1188 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 PSMC6P62333 389 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 LY6KQ17RY6 165 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 CCDC155Q8N6L0 562 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 SYT2Q8N9I0 419 aaPredicted RBP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 BAP1Q92560 729 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 COPS5Q92905 334 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 CRISPLD2Q9H0B8 497 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 RAB21Q9UL25 225 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 PCDHA13Q9Y5I0 950 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 DUSP10Q9Y6W6 482 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 RBM47A0AV96 593 aaKnown RBP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 ERLIN1O75477 346 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 SASH3O75995 380 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 CYP3A4P08684 503 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 TXNP10599 105 aaKnown RBP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 MARSP56192 900 aaKnown RBP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 KCNMA1Q12791 1236 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 ADAM9Q13443 819 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 GIT2Q14161 759 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 LONRF2Q1L5Z9 754 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 PDXDC1Q6P996 788 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 TEX2Q8IWB9 1127 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 CYP2W1Q8TAV3 490 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 SCFD2Q8WU76 684 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 HNRNPLLQ8WVV9 542 aaKnown RBP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 PNKPQ96T60 521 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 EHMT1Q9H9B1 1298 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 XPNPEP3Q9NQH7 507 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 ST7Q9NRC1 585 aa17.01■□□□□ 0.31
CCDC40-202ENST00000374876 GNEQ9Y223 722 aaKnown RBP17.01■□□□□ 0.31
CCDC40-202ENST00000374876 MKI67P46013 3256 aaKnown RBP17■□□□□ 0.31
CCDC40-202ENST00000374876 ANO9A1A5B4 782 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 CETN3O15182 167 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 TUBBP07437 444 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 EDRF1Q3B7T1 1238 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 TRIM59Q8IWR1 403 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 NUCKS1Q9H1E3 243 aaKnown RBP17■□□□□ 0.31
CCDC40-202ENST00000374876 CEP72Q9P209 647 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 VAV3Q9UKW4 847 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 OGDHLQ9ULD0 1010 aa17■□□□□ 0.31
CCDC40-202ENST00000374876 KIAA1217Q5T5P2 1943 aa16.99■□□□□ 0.31
CCDC40-202ENST00000374876 DYNC1LI2O43237 492 aaPredicted RBP16.99■□□□□ 0.31
CCDC40-202ENST00000374876 SORBS3O60504 671 aa16.99■□□□□ 0.31
CCDC40-202ENST00000374876 DUSP11O75319 330 aaKnown RBP16.99■□□□□ 0.31
CCDC40-202ENST00000374876 LCA5LO95447 670 aa16.99■□□□□ 0.31
CCDC40-202ENST00000374876 ITGB5P18084 799 aa16.99■□□□□ 0.31
CCDC40-202ENST00000374876 SP2Q02086 613 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms