RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 GPCPD1Q9NPB8 672 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 INTS9Q9NV88 658 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CEP72Q9P209 647 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 RNF14Q9UBS8 474 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 COG5Q9UP83 839 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 SLC12A4Q9UP95 1085 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 KIF1AQ12756 1690 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 DPPA5A6NC42 116 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 RBAK-RBAKDNI3L0D1 243 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 MPHOSPH10O00566 681 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 ZBTB39O15060 712 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 DNAJC8O75937 253 aaPredicted RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 TSPY3P0CV98 308 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 TSPY8P0CW00 308 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CALM1P0DP23 149 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CALM2P0DP24 149 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CALM3P0DP25 149 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 UCHL3P15374 230 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CALML3P27482 149 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 RPL21P46778 160 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 GALCP54803 685 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 EVA1CP58658 441 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 GRIK3Q13003 919 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 COG2Q14746 738 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 PLCB4Q15147 1175 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 SHROOM1Q2M3G4 852 aaPredicted RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 ERFEQ4G0M1 354 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 NUGGCQ68CJ6 796 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CAPRIN2Q6IMN6 1127 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CAPN12Q6ZSI9 719 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 RFX8Q6ZV50 586 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 UNC13DQ70J99 1090 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 NT5DC3Q86UY8 548 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 SPATS2Q86XZ4 545 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 MYOCDQ8IZQ8 938 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 CYP4X1Q8N118 509 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 RNF10Q8N5U6 811 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 SCFD1Q8WVM8 642 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 UTP4Q969X6 686 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 DNAJC19Q96DA6 116 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 RSRC1Q96IZ7 334 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 FAM210AQ96ND0 272 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 PAIP2Q9BPZ3 127 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 C12orf65Q9H3J6 166 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 EBF2Q9HAK2 575 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 KCNMB3Q9NPA1 279 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 KCNK9Q9NPC2 374 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 METTL5Q9NRN9 209 aaKnown RBP5.87□□□□□ -1.47
ATG4A-204ENST00000372246 USP40Q9NVE5 1235 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 ADAM22Q9P0K1 906 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 KIAA1024Q9UPX6 916 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 C1orf167Q5SNV9 1468 aa5.87□□□□□ -1.47
ATG4A-204ENST00000372246 TIAM2Q8IVF5 1701 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 SSU72P8A0A1W2PR75 194 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 UBAP1LF5GYI3 381 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 RGS16O15492 202 aaPredicted RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CETPP11597 493 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 NQO1P15559 274 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 NR2F2P24468 414 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 PON1P27169 355 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 PMS2P54278 862 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 DR1Q01658 176 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 PLS1Q14651 629 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ARHGAP44Q17R89 818 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 EXOC3L4Q17RC7 722 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ZCWPW2Q504Y3 356 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 FAM26FQ5R3K3 315 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ANKRD20A2Q5SQ80 823 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ANKRD20A1Q5TYW2 823 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ANKRD20A3Q5VUR7 823 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 TTBK2Q6IQ55 1244 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CGB2Q6NT52 195 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 PPP1R18Q6NYC8 613 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 MIS18BP1Q6P0N0 1132 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 RUFY4Q6ZNE9 571 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 LONP2Q86WA8 852 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 EXOC8Q8IYI6 725 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ZNF34Q8IZ26 560 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ARFGAP2Q8N6H7 521 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 SUPT20HQ8NEM7 779 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 TTC8Q8TAM2 541 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 LNX1Q8TBB1 728 aaPredicted RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 SLC35G2Q8TBE7 412 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 DYDC1Q8WWB3 177 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 RAD54LQ92698 747 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 CCDC47Q96A33 483 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 LRRC45Q96CN5 670 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 TLCD1Q96CP7 247 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 KLHL29Q96CT2 875 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ZMYND12Q9H0C1 365 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 THAP2Q9H0W7 228 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 ZDHHC18Q9NUE0 388 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 SLC5A4Q9NY91 659 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 G3BP2Q9UN86 482 aaKnown RBP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 USP54Q70EL1 1684 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 BCORQ6W2J9 1755 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 SMNDC1O75940 238 aaKnown RBP eCLIP5.86□□□□□ -1.47
ATG4A-204ENST00000372246 AKAP3O75969 853 aa5.86□□□□□ -1.47
ATG4A-204ENST00000372246 TARSP26639 723 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms