RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 UPF3AQ9H1J1 476 aaKnown RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 FSD2A1L4K1 749 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 SNAI1O95863 264 aaPredicted RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 CYP11B2P19099 503 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 GPC3P51654 580 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 COPS5Q92905 334 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 GDPD2Q9HCC8 539 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 BAZ2AQ9UIF9 1905 aaKnown RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 DNAJC25-GNG10A0A024R161 153 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 E9PMD0 336 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 CLK2P49760 499 aaKnown RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 MOGSQ13724 837 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 SLC39A5Q6ZMH5 540 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 SESTD1Q86VW0 696 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 DHTKD1Q96HY7 919 aaPredicted RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 CLIC6Q96NY7 704 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 GAS2L1Q99501 681 aaPredicted RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 H7C4K7 107 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 PSMD10O75832 226 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 PSMC2P35998 433 aaKnown RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 ARMC5Q96C12 935 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 RNPC3Q96LT9 517 aaKnown RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 KIF2CQ99661 725 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 MMRN2Q9H8L6 949 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 GJD2Q9UKL4 321 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 PCDHA2Q9Y5H9 948 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 ELF1P32519 619 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 NLRP11P59045 1033 aaKnown RBP10.05□□□□□ -0.8
UPF2-202ENST00000357604 PSMC6P62333 389 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 PAWRQ96IZ0 340 aaKnown RBP10.05□□□□□ -0.8
UPF2-202ENST00000357604 CELF4Q9BZC1 486 aaKnown RBP10.05□□□□□ -0.8
UPF2-202ENST00000357604 CD4P01730 458 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 KCNA2P16389 499 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 EDNRBP24530 442 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 GHRHRQ02643 423 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 FUT2Q10981 343 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 CNKSR3Q6P9H4 555 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 DNAJB3Q8WWF6 145 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 TMEM143Q96AN5 459 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 BLZF1Q9H2G9 400 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 SEPT11Q9NVA2 429 aaKnown RBP10.05□□□□□ -0.8
UPF2-202ENST00000357604 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.05□□□□□ -0.89e-8■■■■□ 22.5
UPF2-202ENST00000357604 EIF3DO15371 548 aaKnown RBP eCLIP10.05□□□□□ -0.8
UPF2-202ENST00000357604 LGR5O75473 907 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 BAIAP3O94812 1187 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 GJA8P48165 433 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 NLRP12P59046 1061 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 EP400NLQ6ZTU2 488 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 PRIMPOLQ96LW4 560 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 SNX25Q9H3E2 840 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 DEF6Q9H4E7 631 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 INPP5FQ9Y2H2 1132 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 MAFO75444 373 aaPredicted RBP10.05□□□□□ -0.8
UPF2-202ENST00000357604 ARHGAP1Q07960 439 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 ATF7IP2Q5U623 682 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 DSTYKQ6XUX3 929 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 CATSPER3Q86XQ3 398 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 CCDC117Q8IWD4 279 aaPredicted RBP10.05□□□□□ -0.8
UPF2-202ENST00000357604 UROC1Q96N76 676 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 GBP3Q9H0R5 595 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 RGL1Q9NZL6 768 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 HDAC6Q9UBN7 1215 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 FAM50BQ9Y247 325 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 FRMPD4Q14CM0 1322 aa10.05□□□□□ -0.8
UPF2-202ENST00000357604 ZNF233A6NK53 670 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 DCAF17Q5H9S7 520 aaPredicted RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 ZNF658Q5TYW1 1059 aaPredicted RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 NELFCDQ8IXH7 590 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 NOX5Q96PH1 765 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 CDY2AQ9Y6F7 541 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 SLC16A4O15374 487 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 LYPLA2O95372 231 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 ANXA13P27216 316 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 CYP2J2P51589 502 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 ABHD15Q6UXT9 468 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 NELFBQ8WX92 580 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 GTF2IRD1Q9UHL9 959 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 FBXO2Q9UK22 296 aaPredicted RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 CNTNAP2Q9UHC6 1331 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 GUCY2CP25092 1073 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 PIK3CAP42336 1068 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 PURAQ00577 322 aaKnown RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 AXDND1Q5T1B0 1012 aaPredicted RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 PLA2G4FQ68DD2 849 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 THNSL1Q8IYQ7 743 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 SYT2Q8N9I0 419 aaPredicted RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 BIN1O00499 593 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 ALDH7A1P49419 539 aaKnown RBP10.04□□□□□ -0.8
UPF2-202ENST00000357604 IL31RAQ8NI17 732 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 MED10Q9BTT4 135 aa10.04□□□□□ -0.8
UPF2-202ENST00000357604 CCP110O43303 1012 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 LAMTOR4Q0VGL1 99 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 ELAVL2Q12926 359 aaKnown RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 GPD1LQ8N335 351 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 LRRC71Q8N4P6 559 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 DDX12PQ92771 950 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 PAGE5Q96GU1 130 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 SAMD11Q96NU1 681 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 MIS12Q9H081 205 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms