RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CAPRIN2Q6IMN6 1127 aaKnown RBP11.02□□□□□ -0.64
SYNE1-203ENST00000354674 CDHR1Q96JP9 859 aa11.02□□□□□ -0.64
SYNE1-203ENST00000354674 PLIN2Q99541 437 aa11.02□□□□□ -0.64
SYNE1-203ENST00000354674 KIAA1217Q5T5P2 1943 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 CTAGE9A4FU28 777 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 SLITRK3O94933 977 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 KCNA2P16389 499 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 HPDP32754 393 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-203ENST00000354674 ZNF792Q3KQV3 632 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 CYB5D1Q6P9G0 228 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 RASSF8Q8NHQ8 419 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 HNRNPLLQ8WVV9 542 aaKnown RBP11.02□□□□□ -0.65
SYNE1-203ENST00000354674 LARP4BQ92615 738 aaKnown RBP11.02□□□□□ -0.65
SYNE1-203ENST00000354674 PSMB7Q99436 277 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 POTEB3A0JP26 581 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 AGPSO00116 658 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 KLRC4O43908 158 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 PYGBP11216 843 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 CASP1P29466 404 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 SLC7A5Q01650 507 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 SREBF2Q12772 1141 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 POTEBQ6S5H4 581 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 TMEM139Q8IV31 216 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 NEK9Q8TD19 979 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 CDK5RAP3Q96JB5 506 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 PAIP2Q9BPZ3 127 aaKnown RBP11.02□□□□□ -0.65
SYNE1-203ENST00000354674 TRIM9Q9C026 710 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 LMCD1Q9NZU5 365 aa11.02□□□□□ -0.65
SYNE1-203ENST00000354674 GRIN2DO15399 1336 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 KRT14P02533 472 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 PGK2P07205 417 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 GRB14Q14449 540 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 C17orf99Q6UX52 265 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 RAD9BQ6WBX8 426 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 SV2BQ7L1I2 683 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 ARMCX6Q7L4S7 300 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 TCP11Q8WWU5 503 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 STAMQ92783 540 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 RAB21Q9UL25 225 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 ABT1Q9ULW3 272 aaKnown RBP11.01□□□□□ -0.65
SYNE1-203ENST00000354674 GUCA1BQ9UMX6 200 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 KIAA1024Q9UPX6 916 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 PLXNA1Q9UIW2 1896 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 B4DLN1 442 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 CNGA1P29973 690 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 MAPK4P31152 587 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 AMPD3Q01432 767 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 ZNF467Q7Z7K2 595 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-203ENST00000354674 RDM1Q8NG50 284 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 NOC3LQ8WTT2 800 aaKnown RBP11.01□□□□□ -0.65
SYNE1-203ENST00000354674 RSRC1Q96IZ7 334 aaKnown RBP11.01□□□□□ -0.65
SYNE1-203ENST00000354674 SELENOOQ9BVL4 669 aa11.01□□□□□ -0.65
SYNE1-203ENST00000354674 TLR2O60603 784 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 RPN1P04843 607 aaKnown RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 CLTAP09496 248 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 CCDC175P0C221 793 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 PECAM1P16284 738 aaPredicted RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 SLC12A3P55017 1021 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 TRIM68Q6AZZ1 485 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 ZNF746Q6NUN9 644 aaPredicted RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 GPR142Q7Z601 462 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 CAGE1Q8TC20 777 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 LRRC27Q9C0I9 530 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 BLZF1Q9H2G9 400 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 SLC39A2Q9NP94 309 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 INTS13Q9NVM9 706 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 POTEFA5A3E0 1075 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 RASSF10A6NK89 507 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 E7EVH7 732 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 HGSO14964 777 aaPredicted RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 CCNE2O96020 404 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 RAB27AP51159 221 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 KRT76Q01546 638 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 PPFIA1Q13136 1202 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 POTEGQ6S5H5 508 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 MPHOSPH6Q99547 160 aaKnown RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 RGL1Q9NZL6 768 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 DIS3Q9Y2L1 958 aaKnown RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 MYMKA6NI61 221 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 E9PMD0 336 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 ZNF185O15231 689 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 RHOBTB3O94955 611 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 LYPLA2O95372 231 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 TGFB3P10600 412 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 ADORA2AP29274 412 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 SFNP31947 248 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 SP2Q02086 613 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 PDE4DQ08499 809 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 TAF1CQ15572 869 aaPredicted RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 SYT2Q8N9I0 419 aaPredicted RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 TC2NQ8N9U0 490 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 MLKLQ8NB16 471 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 ZNF784Q8NCA9 323 aaPredicted RBP11□□□□□ -0.65
SYNE1-203ENST00000354674 MSANTD4Q8NCY6 345 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 DYDC2Q96IM9 177 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 ZIC5Q96T25 663 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 MMS19Q96T76 1030 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 TSGA10Q9BZW7 698 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 RMND1Q9NWS8 449 aa11□□□□□ -0.65
SYNE1-203ENST00000354674 WRAP73Q9P2S5 460 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms