RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ZBP1Q9H171 429 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 SFXN1Q9H9B4 322 aa12.71□□□□□ -0.38
RTN3-204ENST00000354497 AGO4Q9HCK5 861 aaKnown RBP12.71□□□□□ -0.38
RTN3-204ENST00000354497 RIF1Q5UIP0 2472 aaKnown RBP12.7□□□□□ -0.38
RTN3-204ENST00000354497 E7EWF7 191 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 GPR32O75388 356 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 DDAH1O94760 285 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 C22orf31O95567 290 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 CYP21A2P08686 494 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 GBP2P32456 591 aaPredicted RBP12.7□□□□□ -0.38
RTN3-204ENST00000354497 CLCN3P51790 818 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 SWSAP1Q6NVH7 229 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 MIS18BP1Q6P0N0 1132 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 ZC3H14Q6PJT7 736 aaKnown RBP12.7□□□□□ -0.38
RTN3-204ENST00000354497 CCDC60Q8IWA6 550 aaPredicted RBP12.7□□□□□ -0.38
RTN3-204ENST00000354497 DCLK2Q8N568 766 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 SRBD1Q8N5C6 995 aaKnown RBP12.7□□□□□ -0.38
RTN3-204ENST00000354497 RSAD2Q8WXG1 361 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 BBXQ8WY36 941 aaPredicted RBP12.7□□□□□ -0.38
RTN3-204ENST00000354497 TCEAL9Q9UHQ7 104 aa12.7□□□□□ -0.38
RTN3-204ENST00000354497 CCDC69A6NI79 296 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 ATG7O95352 703 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 CCNE2O96020 404 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 SSBP05455 408 aaKnown RBP eCLIP12.69□□□□□ -0.38
RTN3-204ENST00000354497 FGFR4P22455 802 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 GNAQP50148 359 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 ANTXR2P58335 489 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 NLRP11P59045 1033 aaKnown RBP12.69□□□□□ -0.38
RTN3-204ENST00000354497 RSPO4Q2I0M5 234 aaPredicted RBP12.69□□□□□ -0.38
RTN3-204ENST00000354497 LONRF3Q496Y0 759 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 ABHD15Q6UXT9 468 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 GPR149Q86SP6 731 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 CHD1LQ86WJ1 897 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 SLC22A17Q8WUG5 538 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 RUBCNQ92622 972 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 GBP3Q9H0R5 595 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 TBC1D17Q9HA65 648 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 BCCIPQ9P287 314 aaKnown RBP eCLIP12.69□□□□□ -0.38
RTN3-204ENST00000354497 TAF6LQ9Y6J9 622 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 VPS13AQ96RL7 3174 aa12.69□□□□□ -0.38
RTN3-204ENST00000354497 IGKV6D-21A0A0A0MT36 114 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 KRBA1A5PL33 1030 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 ZBTB42B2RXF5 422 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 DCNP07585 359 aaKnown RBP12.68□□□□□ -0.38
RTN3-204ENST00000354497 CTSAP10619 480 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 KLRC2P26717 231 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 SMARCA1P28370 1054 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 GIT2Q14161 759 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 CEP55Q53EZ4 464 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 TAF3Q5VWG9 929 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 CASC1Q6TDU7 716 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 PPFIBP1Q86W92 1011 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 TMEM173Q86WV6 379 aaPredicted RBP12.68□□□□□ -0.38
RTN3-204ENST00000354497 TEX2Q8IWB9 1127 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 IGDCC4Q8TDY8 1250 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 MAP3K14Q99558 947 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 LY9Q9HBG7 655 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 INPP5FQ9Y2H2 1132 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 GVINP1Q7Z2Y8 2422 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 MYO10Q9HD67 2058 aa12.68□□□□□ -0.38
RTN3-204ENST00000354497 SP9P0CG40 484 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 MYBP10242 640 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 NAPAP54920 295 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 PTH1RQ03431 593 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 RNASELQ05823 741 aaKnown RBP12.67□□□□□ -0.38
RTN3-204ENST00000354497 TBC1D8BQ0IIM8 1120 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 NONOQ15233 471 aaKnown RBP eCLIP12.67□□□□□ -0.38
RTN3-204ENST00000354497 LETM2Q2VYF4 491 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 DDX53Q86TM3 631 aaKnown RBP12.67□□□□□ -0.38
RTN3-204ENST00000354497 LRRC71Q8N4P6 559 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 BCL7CQ8WUZ0 217 aaPredicted RBP12.67□□□□□ -0.38
RTN3-204ENST00000354497 EMILIN2Q9BXX0 1053 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 ANO3Q9BYT9 981 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 OSBPL3Q9H4L5 887 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 IGSF9Q9P2J2 1179 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 WNT16Q9UBV4 365 aa12.67□□□□□ -0.38
RTN3-204ENST00000354497 ATP4AP20648 1035 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 EIF4BP23588 611 aaKnown RBP12.66□□□□□ -0.38
RTN3-204ENST00000354497 TMOD1P28289 359 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 POLGP54098 1239 aaPredicted RBP12.66□□□□□ -0.38
RTN3-204ENST00000354497 PTPN14Q15678 1187 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 EFCAB12Q6NXP0 572 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 PLA2G4DQ86XP0 818 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 NLRP7Q8WX94 980 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 LPPQ93052 612 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 IGSF21Q96ID5 467 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 DLL3Q9NYJ7 618 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 NCDNQ9UBB6 729 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 CEP131Q9UPN4 1083 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 DENND4AQ7Z401 1863 aa12.66□□□□□ -0.38
RTN3-204ENST00000354497 A0A0U1RQF3 1178 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 PRC1O43663 620 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 CSDE1O75534 798 aaKnown RBP12.65□□□□□ -0.38
RTN3-204ENST00000354497 ADCY7P51828 1080 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 ZNF598Q86UK7 904 aaKnown RBP12.65□□□□□ -0.38
RTN3-204ENST00000354497 MB21D2Q8IYB1 491 aaPredicted RBP12.65□□□□□ -0.38
RTN3-204ENST00000354497 GPR152Q8TDT2 470 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 KLHL5Q96PQ7 755 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 BACH2Q9BYV9 841 aa12.65□□□□□ -0.38
RTN3-204ENST00000354497 ADAMTS10Q9H324 1103 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms