RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 ZNF174Q15697 407 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 LEXMQ3ZCV2 418 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 NOSTRINQ8IVI9 506 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 TPH2Q8IWU9 490 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 ZNF710Q8N1W2 664 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 KLHL23Q8NBE8 558 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 SPPL3Q8TCT6 385 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 NEK9Q8TD19 979 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 P2RX5Q93086 422 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 FDXACB1Q9BRP7 624 aaPredicted RBP16.14■□□□□ 0.17
HMGN3-202ENST00000344726 PLVAPQ9BX97 442 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 DHX33Q9H6R0 707 aaKnown RBP16.14■□□□□ 0.17
HMGN3-202ENST00000344726 ZSWIM4Q9H7M6 989 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 UPF2Q9HAU5 1272 aaKnown RBP16.14■□□□□ 0.17
HMGN3-202ENST00000344726 BMP2KQ9NSY1 1161 aaPredicted RBP16.14■□□□□ 0.17
HMGN3-202ENST00000344726 TMEM161AQ9NX61 479 aa16.14■□□□□ 0.17
HMGN3-202ENST00000344726 H3BQ06 376 aaPredicted RBP16.13■□□□□ 0.17
HMGN3-202ENST00000344726 LTBRP36941 435 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 DNM2P50570 870 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 HYAL1Q12794 435 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 POTEHQ6S545 545 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 LRRC55Q6ZSA7 311 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 FAM43BQ6ZT52 329 aaPredicted RBP16.13■□□□□ 0.17
HMGN3-202ENST00000344726 RHPN2Q8IUC4 686 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 SCLT1Q96NL6 688 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 LMAN2LQ9H0V9 348 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 CWH43Q9H720 699 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 CD320Q9NPF0 282 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 PCDHGC5Q9Y5F6 944 aa16.13■□□□□ 0.17
HMGN3-202ENST00000344726 A0A087WWV3 80 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 LINC01565O15544 149 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 LYPLA2O95372 231 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 IL9P15248 144 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 ATF7P17544 494 aaPredicted RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 U2AF2P26368 475 aaKnown RBP eCLIP16.12■□□□□ 0.172e-11■■■■■ 34.4
HMGN3-202ENST00000344726 TOB1P50616 345 aaPredicted RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 POLGP54098 1239 aaPredicted RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 DLX2Q07687 328 aaPredicted RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 XKR9Q5GH70 373 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 TTC38Q5R3I4 469 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 ADGRD2Q7Z7M1 963 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 KHSRPQ92945 711 aaKnown RBP eCLIP16.12■□□□□ 0.172e-8■□□□□ 9.3
HMGN3-202ENST00000344726 TMEM143Q96AN5 459 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 PABPC5Q96DU9 382 aaKnown RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 CASD1Q96PB1 797 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 GCOM2Q9BZD3 368 aaPredicted RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 ELAC1Q9H777 363 aaKnown RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 IFT122Q9HBG6 1241 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 XPNPEP1Q9NQW7 623 aa16.12■□□□□ 0.17
HMGN3-202ENST00000344726 TYW1Q9NV66 732 aaKnown RBP16.12■□□□□ 0.17
HMGN3-202ENST00000344726 OR52Z1P0C646 297 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 SPATA31C1P0DKV0 1188 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 RFC5P40937 340 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 CDC42EP1Q00587 391 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 EMC2Q15006 297 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 CTC1Q2NKJ3 1217 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 CLLU1OSQ5K130 101 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 OTUD6AQ7L8S5 288 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 ZNF598Q86UK7 904 aaKnown RBP16.11■□□□□ 0.17
HMGN3-202ENST00000344726 ZNF410Q86VK4 478 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 ECHDC2Q86YB7 292 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 C4orf32Q8N8J7 132 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 POF1BQ8WVV4 589 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 PRPF31Q8WWY3 499 aaKnown RBP16.11■□□□□ 0.17
HMGN3-202ENST00000344726 SLC7A3Q8WY07 619 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 NLRP4Q96MN2 994 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 JPH2Q9BR39 696 aaPredicted RBP16.11■□□□□ 0.17
HMGN3-202ENST00000344726 ATP6V0A4Q9HBG4 840 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 PPME1Q9Y570 386 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 COL4A3BPQ9Y5P4 624 aa16.11■□□□□ 0.17
HMGN3-202ENST00000344726 TBX10O75333 385 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 MED24O75448 989 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 ZSCAN20P17040 1043 aaPredicted RBP16.1■□□□□ 0.17
HMGN3-202ENST00000344726 PBX3P40426 434 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 TECP42680 631 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 FXR2P51116 673 aaKnown RBP eCLIP16.1■□□□□ 0.17
HMGN3-202ENST00000344726 ORC2Q13416 577 aaPredicted RBP16.1■□□□□ 0.17
HMGN3-202ENST00000344726 GNL2Q13823 731 aaKnown RBP16.1■□□□□ 0.17
HMGN3-202ENST00000344726 NAALADL2Q58DX5 795 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 PIP4P2Q8N4L2 257 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 COLGALT1Q8NBJ5 622 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 PIGOQ8TEQ8 1089 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 MINDY3Q9H8M7 445 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 CLDND1Q9NY35 253 aa16.1■□□□□ 0.17
HMGN3-202ENST00000344726 A0A0U1RQF3 1178 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 GRXCR2A6NFK2 248 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 GJB2P29033 226 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 TRAPPC10P48553 1259 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 RARRES1P49788 294 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 LAMTOR4Q0VGL1 99 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 PTCRAQ6ISU1 281 aaPredicted RBP16.09■□□□□ 0.17
HMGN3-202ENST00000344726 EP400NLQ6ZTU2 488 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 CATSPER3Q86XQ3 398 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 RNF169Q8NCN4 708 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 PSPC1Q8WXF1 523 aaKnown RBP16.09■□□□□ 0.17
HMGN3-202ENST00000344726 TMEM117Q9H0C3 514 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 ANKEF1Q9NU02 776 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 PCDHB6Q9Y5E3 794 aa16.09■□□□□ 0.17
HMGN3-202ENST00000344726 MEIS3P2A8K0S8 358 aa16.08■□□□□ 0.16
HMGN3-202ENST00000344726 FGF18O76093 207 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms