RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 H2AFZP0C0S5 128 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 YWHABP31946 246 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 RARRES1P49788 294 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 GMPSP49915 693 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 BAATQ14032 418 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 H2AFVQ71UI9 128 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 DAAM2Q86T65 1068 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 SAAL1Q96ER3 474 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 LARSQ9P2J5 1176 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 KRT13P13646 458 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PRLRP16471 622 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 QARSP47897 775 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 GALCP54803 685 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 HNRNPH2P55795 449 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PRPF4BQ13523 1007 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 DALRD3Q5D0E6 543 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 TAF3Q5VWG9 929 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 RNF207Q6ZRF8 634 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 KAT5Q92993 513 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 RIT2Q99578 217 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 UBE2TQ9NPD8 197 aaPredicted RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 SYNPO2Q9UMS6 1093 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 F8VZ95 297 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 WDR46O15213 610 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 SOX5P35711 763 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 ZNF131P52739 623 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 HMGCS2P54868 508 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 BFSP1Q12934 665 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PGM5Q15124 567 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PHLDB3Q6NSJ2 640 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PEX26Q7Z412 305 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 SLC38A10Q9HBR0 1119 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 ODF2LQ9ULJ1 636 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PCDHGC5Q9Y5F6 944 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 GOLGA6BA6NDN3 693 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 FOXN3O00409 490 aaPredicted RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 FAM153BP0C7A2 387 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 BAG6P46379 1132 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 JAM2P57087 298 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 PPP3CAQ08209 521 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 FAM153CQ494X1 144 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 FKBP1CQ5VVH2 108 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 MCF2L2Q86YR7 1114 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 TSEN2Q8NCE0 465 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 SLC20A1Q8WUM9 679 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 POP1Q99575 1024 aaKnown RBP11.25□□□□□ -0.61
LIMA1-201ENST00000341247 FAM153AQ9UHL3 310 aa11.25□□□□□ -0.61
LIMA1-201ENST00000341247 TMEM110-MUSTN1A8MSY1 372 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 CCNE2O96020 404 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 B3GNT9Q6UX72 402 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 HAUS6Q7Z4H7 955 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 FAM71BQ8TC56 605 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 WRNIP1Q96S55 665 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 RNF146Q9NTX7 359 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 CNOT7Q9UIV1 285 aaKnown RBP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 IGSF9BQ9UPX0 1349 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 KIF4AO95239 1232 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 GUCY2CP25092 1073 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 TTC19Q6DKK2 380 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 ARHGEF19Q8IW93 802 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 TPCN2Q8NHX9 752 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 SEL1LQ9UBV2 794 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 PPP1R9AQ9ULJ8 1098 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 BZW2Q9Y6E2 419 aaKnown RBP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 RAD51CO43502 376 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 ZBED4O75132 1171 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 CLSTN1O94985 981 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 FERP16591 822 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 TNFAIP3P21580 790 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 HLTFQ14527 1009 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 LLGL1Q15334 1064 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 ARHGAP27Q6ZUM4 889 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 DDX42Q86XP3 938 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 GOLGA6L1Q8N7Z2 621 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 AENQ8WTP8 325 aaKnown RBP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 PDCD2LQ9BRP1 358 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 DDX47Q9H0S4 455 aaKnown RBP11.24□□□□□ -0.61
LIMA1-201ENST00000341247 UBIAD1Q9Y5Z9 338 aa11.24□□□□□ -0.61
LIMA1-201ENST00000341247 AGPSO00116 658 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 CALCAP01258 141 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 COPB2P35606 906 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 MAP2K1Q02750 393 aaPredicted RBP11.23□□□□□ -0.61
LIMA1-201ENST00000341247 SNRNP48Q6IEG0 339 aaKnown RBP11.23□□□□□ -0.61
LIMA1-201ENST00000341247 METTL13Q8N6R0 699 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 INPP4AQ96PE3 977 aaPredicted RBP11.23□□□□□ -0.61
LIMA1-201ENST00000341247 HSPBP1Q9NZL4 362 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 APEX2Q9UBZ4 518 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 TSKSQ9UJT2 592 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 PLA2G6O60733 806 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 ITGA4P13612 1032 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 VAMP7P51809 220 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 TNFAIP1Q13829 316 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 PCNX4Q63HM2 1172 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 CBWD2Q8IUF1 395 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 MTMR14Q8NCE2 650 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 PLEKHO2Q8TD55 490 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 ARHGEF26Q96DR7 871 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 STK33Q9BYT3 514 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 KIAA1683Q9H0B3 1180 aa11.23□□□□□ -0.61
LIMA1-201ENST00000341247 TOPORSQ9NS56 1045 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms